Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   MKY76_RS14770 Genome accession   NZ_CP151995
Coordinates   2937824..2939515 (-) Length   563 a.a.
NCBI ID   WP_342556796.1    Uniprot ID   -
Organism   Lysinibacillus sp. FSL P4-0201     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2932824..2944515
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKY76_RS14750 (MKY76_14750) - 2933245..2934816 (-) 1572 WP_048392301.1 FapA family protein -
  MKY76_RS14755 (MKY76_14755) - 2935095..2935274 (-) 180 WP_082148132.1 hypothetical protein -
  MKY76_RS14760 (MKY76_14760) spo0A 2935578..2936369 (-) 792 WP_016993890.1 sporulation transcription factor Spo0A -
  MKY76_RS14765 (MKY76_14765) - 2936754..2937701 (-) 948 WP_342556795.1 SpoIVB peptidase S55 domain-containing protein -
  MKY76_RS14770 (MKY76_14770) recN 2937824..2939515 (-) 1692 WP_342556796.1 DNA repair protein RecN Machinery gene
  MKY76_RS14775 (MKY76_14775) argR 2939549..2939998 (-) 450 WP_004231170.1 transcriptional regulator ArgR -
  MKY76_RS14780 (MKY76_14780) - 2940099..2940917 (-) 819 WP_342556797.1 TlyA family RNA methyltransferase -
  MKY76_RS14785 (MKY76_14785) dxs 2940917..2942818 (-) 1902 WP_048392297.1 1-deoxy-D-xylulose-5-phosphate synthase -
  MKY76_RS14790 (MKY76_14790) - 2942982..2943863 (-) 882 WP_115673382.1 polyprenyl synthetase family protein -
  MKY76_RS14795 (MKY76_14795) xseB 2943867..2944100 (-) 234 WP_008179899.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 563 a.a.        Molecular weight: 63437.23 Da        Isoelectric Point: 4.6214

>NTDB_id=984054 MKY76_RS14770 WP_342556796.1 2937824..2939515(-) (recN) [Lysinibacillus sp. FSL P4-0201]
MLRELSIRNFAIIEDLTVSFLEGLTVLTGETGAGKSIIIDAVHLLAGGRGNTEFIRHGARKAELGGLFQISSSVHPVLKK
LEEAGIEIEEDTIILRRDLNDTGKSICRVNGKLVPLSVLRDIGASLIDIHGQHENQELMDEKQHINLLDQFAEEELSPIQ
KNYRAQYDEYRLLKKDLASISIDEQLMAQRIDLYQFQIKELDEANLKLGEEDELLDERRRLMNFNKIFERSSAAYEAIQG
ETKGLDWIGTAMGALEDAATVDEQFKESSEAVTTAFYALQDAAYQVKNVLDELEFDPARLNEVEQRLALLQTLKRKYGST
VEEILAYYEKIKNELNELLNRDEILQVKERRVLEMEAVLNELASELSTVRKAAAQQLSEAIMAELRELHMEKAKFIVNFD
ELPYFDANGKDQIIFYISTNVGEPPKSLPKIASGGELSRMMLALKTIFSSSNGITSIIFDEVDTGVSGRVAQAIAEKIAA
ISVNSQVLCISHLPQVAAMADHHYFIKKEVEHDRTFTSLSEIDQDARIEEVSRMMSGTEITALTLQHATELLKMADERKK
QMR

Nucleotide


Download         Length: 1692 bp        

>NTDB_id=984054 MKY76_RS14770 WP_342556796.1 2937824..2939515(-) (recN) [Lysinibacillus sp. FSL P4-0201]
GTGTTAAGAGAGCTTAGTATTCGAAACTTTGCCATCATTGAGGATTTGACTGTCAGCTTTTTAGAAGGCTTAACAGTTCT
CACTGGGGAAACAGGTGCCGGAAAATCTATTATCATTGATGCGGTGCATTTACTTGCAGGAGGACGAGGCAACACTGAAT
TTATTCGTCATGGCGCAAGAAAAGCAGAATTGGGTGGCTTATTTCAAATTTCGAGTTCAGTTCATCCTGTTCTGAAAAAG
TTAGAAGAAGCAGGCATTGAAATAGAAGAAGATACAATTATTTTACGTCGTGATTTGAATGATACCGGTAAAAGTATTTG
CCGAGTGAATGGAAAGCTCGTGCCTTTGTCGGTACTAAGAGACATTGGGGCAAGTCTCATAGATATTCATGGCCAACATG
AAAATCAAGAGCTAATGGATGAAAAGCAGCACATCAATTTGCTTGATCAGTTTGCAGAAGAAGAGCTGTCGCCGATTCAA
AAAAACTATCGCGCCCAATATGATGAATACCGTTTGCTCAAAAAAGACTTAGCTTCTATATCCATTGATGAGCAGTTGAT
GGCACAACGTATCGATTTGTATCAATTTCAAATTAAAGAGTTGGACGAAGCTAATTTAAAGTTAGGTGAGGAAGACGAGC
TTCTAGACGAACGCCGTCGTCTGATGAATTTTAATAAAATTTTTGAACGTTCTAGTGCAGCCTATGAAGCCATTCAGGGC
GAAACAAAAGGGCTTGATTGGATCGGAACAGCAATGGGTGCTTTAGAAGATGCTGCAACGGTTGATGAGCAATTCAAAGA
ATCATCTGAGGCAGTGACAACTGCGTTTTATGCATTACAGGATGCAGCCTATCAGGTCAAAAATGTGTTAGATGAATTGG
AATTTGACCCTGCACGTTTAAACGAGGTTGAGCAGCGTTTAGCGTTGTTGCAAACTTTAAAACGCAAATATGGTTCGACA
GTGGAAGAGATCTTGGCTTATTATGAAAAAATTAAAAACGAGTTAAATGAGCTGTTGAATCGTGATGAGATTTTGCAGGT
GAAAGAACGACGTGTGTTAGAGATGGAAGCTGTACTCAATGAGCTGGCTAGTGAACTTTCAACTGTACGTAAAGCTGCAG
CTCAACAATTGAGTGAAGCAATTATGGCAGAGCTACGTGAATTACATATGGAAAAAGCAAAATTTATTGTCAATTTCGAT
GAATTACCCTATTTCGATGCCAATGGGAAAGATCAAATTATCTTCTACATTTCCACAAACGTTGGGGAACCACCAAAGTC
TTTACCGAAAATTGCATCAGGTGGAGAATTATCACGAATGATGCTAGCGTTGAAAACCATTTTCTCTTCTTCCAATGGAA
TTACTTCCATTATCTTTGATGAGGTGGATACAGGTGTCAGTGGTCGGGTTGCGCAGGCGATTGCAGAGAAAATTGCCGCG
ATTTCTGTTAATTCTCAAGTTTTATGTATTTCACATTTACCTCAAGTCGCAGCGATGGCTGATCATCATTACTTCATTAA
AAAAGAAGTCGAGCATGATCGAACGTTTACTTCCTTATCAGAGATTGATCAAGATGCTCGTATAGAGGAAGTTAGCCGTA
TGATGTCTGGAACGGAAATTACAGCGTTGACACTACAGCATGCCACGGAGCTTTTAAAAATGGCAGATGAACGAAAAAAA
CAAATGCGTTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-509)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

52.34

100

0.536

Multiple sequence alignment