Detailed information NTG0984022

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACN9LK_RS05460
• Genome accession: NZ_CP184030
• Coordinates: 1135360..1136352 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 1436
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1130360..1141352

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACN9LK_RS05430 (ACN9LK_05430)	ispD	1130421..1131131 (+)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
ACN9LK_RS05435 (ACN9LK_05435)	ispF	1131131..1131610 (+)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACN9LK_RS05440 (ACN9LK_05440)	truD	1131607..1132656 (+)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
ACN9LK_RS05445 (ACN9LK_05445)	surE	1132637..1133398 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ACN9LK_RS05450 (ACN9LK_05450)	pcm	1133392..1134018 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ACN9LK_RS05455 (ACN9LK_05455)	nlpD	1134203..1135297 (+)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
ACN9LK_RS05460 (ACN9LK_05460)	rpoS	1135360..1136352 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
ACN9LK_RS05465 (ACN9LK_05465)	-	1136523..1137074 (-)	552	WP_001179444.1	flavodoxin family protein	-
ACN9LK_RS05470 (ACN9LK_05470)	-	1137299..1138342 (+)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
ACN9LK_RS05475 (ACN9LK_05475)	ygbN	1138485..1139849 (-)	1365	WP_000104433.1	GntP family transporter	-
ACN9LK_RS05480 (ACN9LK_05480)	ygbM	1139938..1140714 (-)	777	WP_001136914.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=984022 ACN9LK_RS05460 WP_000081550.1 1135360..1136352(+) (rpoS) [Escherichia coli strain 1436]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=984022 ACN9LK_RS05460 WP_000081550.1 1135360..1136352(+) (rpoS) [Escherichia coli strain 1436]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715