Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   NST76_RS13455 Genome accession   NZ_CP151994
Coordinates   2786571..2788262 (-) Length   563 a.a.
NCBI ID   WP_342543998.1    Uniprot ID   -
Organism   Lysinibacillus sp. FSL W7-1291     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2781571..2793262
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST76_RS13435 (NST76_13435) - 2781821..2783392 (-) 1572 WP_058844034.1 FapA family protein -
  NST76_RS13440 (NST76_13440) - 2783707..2783907 (-) 201 WP_058844033.1 hypothetical protein -
  NST76_RS13445 (NST76_13445) spo0A 2784338..2785129 (-) 792 WP_036122798.1 sporulation transcription factor Spo0A -
  NST76_RS13450 (NST76_13450) - 2785500..2786447 (-) 948 WP_036122795.1 SpoIVB peptidase S55 domain-containing protein -
  NST76_RS13455 (NST76_13455) recN 2786571..2788262 (-) 1692 WP_342543998.1 DNA repair protein RecN Machinery gene
  NST76_RS13460 (NST76_13460) argR 2788296..2788745 (-) 450 WP_004231170.1 transcriptional regulator ArgR -
  NST76_RS13465 (NST76_13465) - 2788846..2789664 (-) 819 WP_036122784.1 TlyA family RNA methyltransferase -
  NST76_RS13470 (NST76_13470) dxs 2789664..2791565 (-) 1902 WP_036122781.1 1-deoxy-D-xylulose-5-phosphate synthase -
  NST76_RS13475 (NST76_13475) - 2791729..2792610 (-) 882 WP_340811486.1 polyprenyl synthetase family protein -
  NST76_RS13480 (NST76_13480) xseB 2792614..2792847 (-) 234 WP_008179899.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 563 a.a.        Molecular weight: 63236.96 Da        Isoelectric Point: 4.6230

>NTDB_id=984015 NST76_RS13455 WP_342543998.1 2786571..2788262(-) (recN) [Lysinibacillus sp. FSL W7-1291]
MLRELSIRNFAIIEDLTVSFSEGLTVLTGETGAGKSIIIDAVHLLAGGRGNTEFIRHGARKAELGGLFQISSSIHPVLKK
LEEAGIEIEEDTVILRRDLNDSGKSICRVNGKLVPLSVLRDIGASLIDIHGQHENQELMDEKQHINLLDQFAEEELSPIQ
KTYSTHYDEYRLLKKDLASISIDEQLMAQRIDLYQFQIKELEEANLKLGEEDELLDERRRLMNFNKIFERSSAAYEAIQG
ESKGLDWIGAAMGALEDAATVDEQFKEASEAVTTAFYALQDAAYQVKNVLDELEFDPARLNEVEQRLALLQNLKRKYGST
VEEILAYYEKIKTELNELLNRDEILQVKERRVLEMEAVLSELASELSTVRKAAAQQLSEAIMAELRELHMEKAKFIVNFD
ELPYCDANGKDQIIFYISTNVGEPPKSLPKIASGGELSRMMLALKTIFSSSNGITSIIFDEVDTGVSGRVAQAIAEKIAA
ISVNSQVLCISHLPQVAAMADHHYFIKKEVEHDRTFTSLSEIDQDARIEEVSRMMSGTEITALTLQHATELLKMADERKK
QMR

Nucleotide


Download         Length: 1692 bp        

>NTDB_id=984015 NST76_RS13455 WP_342543998.1 2786571..2788262(-) (recN) [Lysinibacillus sp. FSL W7-1291]
GTGTTAAGAGAGCTTAGTATTCGAAACTTTGCTATCATTGAGGATTTGACAGTGAGTTTTTCAGAAGGCTTAACTGTACT
CACAGGGGAAACGGGTGCTGGAAAATCCATTATCATTGATGCTGTGCATTTACTTGCGGGGGGACGAGGCAATACTGAAT
TTATTCGTCATGGCGCAAGAAAGGCAGAATTGGGTGGCTTATTTCAAATTTCGAGTTCGATTCATCCTGTTCTGAAAAAA
TTAGAAGAAGCAGGCATTGAAATAGAAGAAGATACCGTTATTTTACGCCGTGATTTAAATGATTCTGGTAAAAGTATTTG
CCGTGTAAATGGAAAGCTTGTGCCCTTATCCGTTTTAAGAGATATTGGGGCAAGTCTCATTGATATTCATGGTCAACATG
AAAATCAAGAGTTGATGGATGAAAAACAGCATATTAATTTGCTTGACCAGTTTGCAGAGGAAGAGCTGTCACCTATTCAA
AAAACGTATAGTACCCACTATGATGAATACCGTTTACTCAAAAAAGACTTAGCCTCCATATCCATCGATGAACAATTGAT
GGCACAACGGATTGATTTGTATCAATTCCAAATAAAAGAGCTAGAGGAAGCCAATTTAAAGCTAGGTGAGGAAGATGAGC
TCCTAGATGAACGTCGCCGTCTTATGAACTTCAATAAAATTTTTGAACGCTCTAGTGCAGCCTATGAGGCCATTCAAGGC
GAATCGAAAGGGCTCGATTGGATTGGTGCTGCTATGGGCGCGCTAGAAGATGCTGCAACAGTTGACGAACAATTTAAAGA
AGCTTCTGAAGCGGTGACAACTGCGTTTTATGCCTTGCAGGATGCAGCCTATCAGGTCAAAAATGTATTAGATGAATTAG
AATTCGATCCAGCTCGTTTAAATGAGGTTGAGCAACGTTTAGCGTTATTGCAAAATTTAAAGCGCAAATATGGTTCTACA
GTGGAAGAAATTTTAGCGTATTACGAAAAAATTAAAACAGAGTTAAATGAGCTGTTGAATCGTGATGAAATATTGCAAGT
GAAAGAACGACGTGTGTTAGAAATGGAAGCTGTGCTCAGTGAGCTGGCGAGTGAACTTTCAACTGTACGTAAAGCTGCCG
CCCAGCAATTAAGTGAAGCAATTATGGCAGAGTTACGTGAATTACATATGGAAAAAGCAAAATTTATTGTCAATTTCGAT
GAATTACCATATTGTGATGCTAACGGGAAAGATCAGATCATTTTCTATATCTCTACAAACGTTGGAGAACCGCCGAAGTC
TTTACCAAAAATTGCATCAGGCGGAGAATTATCGCGCATGATGCTTGCATTAAAAACCATTTTTTCCTCTTCTAATGGCA
TTACATCCATTATTTTTGATGAGGTTGATACGGGTGTCAGTGGCCGTGTGGCGCAAGCCATTGCAGAAAAAATAGCCGCG
ATTTCCGTTAATTCTCAAGTTTTATGTATTTCACATTTACCGCAGGTTGCTGCTATGGCTGATCATCATTACTTTATAAA
AAAAGAAGTGGAGCATGATCGAACATTTACATCTTTATCAGAGATTGATCAAGATGCTCGAATTGAAGAAGTAAGTCGCA
TGATGTCCGGAACAGAAATTACCGCCTTAACATTACAGCATGCAACGGAACTTTTAAAAATGGCGGATGAACGAAAAAAA
CAGATGCGTTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-509)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

52.686

100

0.54

Multiple sequence alignment