Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NSQ95_RS18820 Genome accession   NZ_CP151993
Coordinates   3814606..3815976 (-) Length   456 a.a.
NCBI ID   WP_169359395.1    Uniprot ID   -
Organism   Psychrobacillus sp. FSL W7-1457     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3809606..3820976
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ95_RS18800 (NSQ95_18800) gltX 3810440..3811903 (-) 1464 WP_342560052.1 glutamate--tRNA ligase -
  NSQ95_RS18805 (NSQ95_18805) ispF 3812050..3812529 (-) 480 WP_342560053.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  NSQ95_RS18810 (NSQ95_18810) ispD 3812531..3813223 (-) 693 WP_342560054.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  NSQ95_RS18815 (NSQ95_18815) - 3813290..3814381 (-) 1092 WP_169359394.1 PIN/TRAM domain-containing protein -
  NSQ95_RS18820 (NSQ95_18820) radA 3814606..3815976 (-) 1371 WP_169359395.1 DNA repair protein RadA Machinery gene
  NSQ95_RS18825 (NSQ95_18825) - 3816350..3818800 (-) 2451 WP_169359396.1 ATP-dependent Clp protease ATP-binding subunit -
  NSQ95_RS18830 (NSQ95_18830) - 3818797..3819891 (-) 1095 WP_298474074.1 protein arginine kinase -
  NSQ95_RS18835 (NSQ95_18835) - 3819881..3820384 (-) 504 WP_342560055.1 UvrB/UvrC motif-containing protein -
  NSQ95_RS18840 (NSQ95_18840) - 3820437..3820910 (-) 474 WP_340881349.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 49979.53 Da        Isoelectric Point: 7.0114

>NTDB_id=983988 NSQ95_RS18820 WP_169359395.1 3814606..3815976(-) (radA) [Psychrobacillus sp. FSL W7-1457]
MAKKKTKFMCNSCGYEAAKWMGRCPGCGEWNTMVEEVEVVSKGPRHSFQHSSGVTQKATPIISIETIDEPRVQTDLVELN
RVLGGGIVPGSLVLIGGDPGIGKSTLLLQVSALLANKGERVLYISGEESIRQTKLRAERLGVTSNELYIYSETNLELINE
TIDQVSPRFVIVDSIQTVHHPEVTSAPGSVSQVRESTAELMRIAKTKNIAIFLVGHVTKEGQIAGPRILEHMVDTVLYFE
GERHHNHRILRSQKNRFGSTNEIAIFEMVQQGLKEVLNPSELFLQERSHGAAGSAIVASMEGTRPILVEIQALVTQSSFN
YPKRMATGIDQNRISLLMAVLEKRMGLLLQTQDAYIKVAGGVKLDEPAIDLAVLVSIVSSFRDIGVASTDCFIGEVGLTG
EVRRVSRIEQRVQEAAKLGFKRAIIPASNMGGWDYPKGLQVIGVESVNEVMKEAFS

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=983988 NSQ95_RS18820 WP_169359395.1 3814606..3815976(-) (radA) [Psychrobacillus sp. FSL W7-1457]
ATGGCAAAAAAGAAAACGAAATTTATGTGTAACTCATGTGGCTATGAGGCTGCGAAATGGATGGGTAGATGTCCAGGGTG
TGGAGAATGGAACACGATGGTGGAAGAGGTAGAGGTTGTTTCTAAGGGGCCTAGACATTCTTTTCAGCATTCCTCTGGAG
TCACTCAAAAAGCAACGCCCATTATATCTATTGAAACGATCGATGAGCCTCGTGTACAGACGGATTTAGTAGAATTGAAT
CGGGTCTTAGGTGGAGGAATTGTGCCAGGCTCCCTAGTTTTAATTGGGGGAGATCCAGGTATAGGTAAATCAACGCTTCT
TTTACAAGTTTCTGCACTTCTTGCGAATAAGGGAGAAAGAGTCCTCTACATTTCTGGAGAAGAATCCATCCGCCAGACGA
AACTCCGAGCAGAACGTCTAGGAGTTACTTCAAACGAACTTTATATCTATTCGGAAACTAATCTAGAGCTGATAAATGAA
ACAATCGATCAAGTAAGTCCGCGTTTTGTAATCGTGGATTCTATACAAACTGTGCATCACCCAGAAGTAACGAGTGCACC
AGGTAGCGTGTCTCAAGTACGTGAAAGTACTGCTGAGCTGATGCGTATCGCGAAGACTAAAAATATTGCGATCTTTTTAG
TTGGTCATGTAACTAAGGAAGGGCAAATCGCCGGGCCAAGGATTCTCGAGCATATGGTAGATACGGTTTTATATTTTGAG
GGTGAGCGTCATCACAATCATCGTATATTGCGTTCGCAAAAAAATAGATTTGGGTCGACTAATGAGATTGCTATTTTTGA
AATGGTACAACAGGGCCTAAAGGAAGTACTGAATCCTTCTGAGTTATTTTTGCAGGAGCGTTCTCATGGAGCAGCAGGCT
CTGCAATCGTCGCGTCTATGGAAGGTACAAGACCGATCTTAGTAGAGATTCAAGCGCTAGTCACACAGTCGAGCTTTAAC
TATCCAAAAAGAATGGCTACTGGGATTGACCAAAATAGAATTTCCTTGTTGATGGCAGTGCTAGAAAAACGCATGGGACT
GCTACTTCAAACGCAAGACGCCTATATAAAAGTTGCCGGTGGAGTAAAATTAGACGAACCTGCCATCGATTTAGCCGTCC
TAGTAAGTATTGTCTCTAGTTTTAGAGATATAGGTGTTGCTTCAACTGACTGTTTTATAGGAGAAGTCGGATTAACTGGT
GAGGTAAGGCGAGTTTCGAGGATTGAACAAAGAGTGCAAGAGGCTGCAAAGCTCGGCTTTAAACGAGCAATCATCCCAGC
ATCGAATATGGGAGGCTGGGACTATCCAAAGGGACTTCAGGTCATTGGTGTAGAATCAGTAAATGAAGTGATGAAGGAAG
CTTTTTCTTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(362-429)

AAA domain (AAA_25)

(75-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

70.961

100

0.713
  radA Streptococcus pneumoniae Rx1

61.926

100

0.621
  radA Streptococcus pneumoniae D39

61.926

100

0.621
  radA Streptococcus pneumoniae R6

61.926

100

0.621
  radA Streptococcus pneumoniae TIGR4

61.926

100

0.621
  radA Streptococcus mitis NCTC 12261

61.926

100

0.621
  radA Streptococcus mitis SK321

61.707

100

0.618

Multiple sequence alignment