Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   NSQ95_RS10585 Genome accession   NZ_CP151993
Coordinates   2181195..2182898 (-) Length   567 a.a.
NCBI ID   WP_340883278.1    Uniprot ID   -
Organism   Psychrobacillus sp. FSL W7-1457     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2176195..2187898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ95_RS10570 (NSQ95_10570) - 2177854..2178381 (+) 528 WP_340883281.1 hypothetical protein -
  NSQ95_RS10575 (NSQ95_10575) spo0A 2178741..2179532 (-) 792 WP_169358145.1 sporulation transcription factor Spo0A -
  NSQ95_RS10580 (NSQ95_10580) - 2180143..2181099 (-) 957 WP_340883279.1 SpoIVB peptidase S55 domain-containing protein -
  NSQ95_RS10585 (NSQ95_10585) recN 2181195..2182898 (-) 1704 WP_340883278.1 DNA repair protein RecN Machinery gene
  NSQ95_RS10590 (NSQ95_10590) argR 2183153..2183602 (-) 450 WP_340883277.1 transcriptional regulator ArgR -
  NSQ95_RS10595 (NSQ95_10595) - 2183701..2184519 (-) 819 WP_340883276.1 TlyA family RNA methyltransferase -
  NSQ95_RS10600 (NSQ95_10600) dxs 2184516..2186411 (-) 1896 WP_340885955.1 1-deoxy-D-xylulose-5-phosphate synthase -
  NSQ95_RS10605 (NSQ95_10605) - 2186501..2187385 (-) 885 WP_340883275.1 polyprenyl synthetase family protein -
  NSQ95_RS10610 (NSQ95_10610) xseB 2187375..2187596 (-) 222 WP_169358139.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 567 a.a.        Molecular weight: 64052.00 Da        Isoelectric Point: 4.9101

>NTDB_id=983976 NSQ95_RS10585 WP_340883278.1 2181195..2182898(-) (recN) [Psychrobacillus sp. FSL W7-1457]
MLKELSIKNFAIIDELSVGFDEGLTVLTGETGAGKSIIIDAVHLLCGGRGSQEFIRHGARKAELEGLFIITDPQHSVFKK
MFDVGIDVDDETIILRRDLNDSGKSVCRVNGKLVTIGILREIGASLIDIHGQHESQELMDDKAHIHLLDQFAGEDLKVVK
ENYKELFHTYKKWKKELATLTENEQQIAHKIDLYTFQVEEIEEAQLKSGEEELLQNEKKKLLNFHKVFDKMSNSYEAILG
ESKGLDYIGTAMSDLMDISDVDDNMKELSESVSSAFYILQDAAHQLKNELDEMEYDSNQLLEVEERLATIQTLKRKYGSS
IEEILEYKDQIQHSLSQLVNRDEQIQKMGEKIKQIEIDLQLEANELTVKRKIAAEKLSKAIMEQLKELYMEKATFSVMFH
EQSNQTYNEDGLDDLSFYISTNVGEPLKALTKIASGGELSRMMLALKSIFSKHQGITSIIFDEVDTGVSGRVAQAIAEKI
AGIATNSQVLCISHLSQVAAMADQHLLIRKEVTGNRTYTLLEEITDNKRAEELSRMMSGTEITTTTLKHSKELLKIANER
KKILRNS

Nucleotide


Download         Length: 1704 bp        

>NTDB_id=983976 NSQ95_RS10585 WP_340883278.1 2181195..2182898(-) (recN) [Psychrobacillus sp. FSL W7-1457]
TTGTTAAAAGAACTTTCCATTAAAAACTTTGCTATTATAGACGAGCTATCAGTTGGTTTCGACGAAGGACTAACTGTATT
AACTGGTGAAACTGGTGCTGGTAAATCCATTATTATAGATGCAGTTCATTTACTCTGTGGAGGTAGAGGCTCACAGGAAT
TTATTCGACATGGAGCACGAAAAGCTGAACTGGAAGGATTATTCATCATAACAGATCCACAACATAGTGTTTTTAAGAAA
ATGTTTGACGTTGGTATAGATGTCGACGACGAAACTATTATTCTCCGAAGAGATTTAAATGATTCTGGAAAAAGTGTCTG
TAGAGTTAATGGAAAATTAGTTACTATAGGCATTTTAAGAGAGATTGGTGCTAGTTTAATAGATATTCATGGCCAACATG
AAAGCCAAGAACTTATGGATGACAAAGCACATATTCATTTACTAGACCAATTTGCTGGAGAAGACTTAAAGGTAGTAAAA
GAAAATTATAAAGAATTGTTCCATACATATAAAAAATGGAAAAAAGAACTTGCGACACTGACGGAAAACGAACAACAAAT
AGCGCATAAAATAGATTTGTACACTTTTCAAGTAGAGGAAATAGAGGAAGCACAGTTGAAAAGTGGAGAAGAAGAATTAC
TCCAAAATGAAAAAAAGAAATTATTAAATTTTCATAAGGTGTTCGACAAGATGAGTAATTCCTATGAAGCTATTTTAGGA
GAATCTAAAGGATTAGATTATATAGGAACTGCAATGTCTGATTTAATGGATATTTCCGATGTTGATGATAATATGAAGGA
GTTAAGTGAAAGCGTATCTTCTGCTTTTTATATATTACAGGATGCCGCCCACCAGCTTAAAAATGAGCTGGACGAGATGG
AATATGATAGCAATCAGTTGCTTGAGGTGGAAGAGAGACTTGCAACTATTCAAACGTTAAAAAGAAAATATGGCTCATCC
ATTGAAGAAATTTTAGAATACAAAGATCAAATTCAGCATAGCCTAAGCCAATTAGTCAATAGAGATGAACAGATTCAAAA
AATGGGTGAAAAAATCAAGCAAATTGAAATTGATCTTCAGTTGGAAGCAAATGAATTGACCGTAAAACGTAAAATTGCTG
CTGAAAAGTTAAGTAAAGCAATTATGGAGCAGCTTAAAGAGTTATATATGGAAAAAGCTACTTTTTCGGTTATGTTTCAT
GAACAGTCTAACCAAACGTATAATGAAGATGGCTTAGATGACTTGTCATTTTACATTTCTACAAATGTGGGAGAGCCATT
AAAAGCATTAACGAAAATAGCGTCCGGAGGAGAACTTTCTCGTATGATGTTGGCCCTAAAAAGCATTTTTTCAAAACACC
AAGGGATTACTTCCATCATTTTCGATGAAGTAGACACCGGAGTTAGCGGACGTGTTGCTCAGGCCATAGCGGAGAAAATA
GCTGGCATTGCTACGAATTCTCAGGTTCTGTGCATTTCTCATCTTTCTCAGGTTGCAGCAATGGCAGATCAGCATTTGTT
AATCCGAAAAGAAGTGACTGGAAATAGAACGTATACATTATTGGAGGAAATTACAGACAATAAACGAGCTGAGGAATTGA
GCCGAATGATGTCAGGTACCGAAATAACTACGACTACTTTAAAACACTCCAAAGAATTATTAAAAATTGCAAATGAACGT
AAAAAAATATTAAGAAACTCGTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

52.265

100

0.529

Multiple sequence alignment