Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   NSQ70_RS08715 Genome accession   NZ_CP151992
Coordinates   1733515..1733895 (+) Length   126 a.a.
NCBI ID   WP_224564554.1    Uniprot ID   -
Organism   Bacillus sp. FSL R5-0397     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1728515..1738895
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ70_RS08705 (NSQ70_08705) - 1730238..1731146 (+) 909 WP_008343827.1 trypsin-like serine protease -
  NSQ70_RS08710 (NSQ70_08710) - 1731293..1733287 (+) 1995 WP_335364304.1 glycosyltransferase family 39 protein -
  NSQ70_RS08715 (NSQ70_08715) nucA/comI 1733515..1733895 (+) 381 WP_224564554.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  NSQ70_RS08720 (NSQ70_08720) - 1734039..1734887 (+) 849 WP_017359585.1 STAS domain-containing protein -
  NSQ70_RS08725 (NSQ70_08725) - 1734920..1735462 (-) 543 WP_017359584.1 IseA DL-endopeptidase inhibitor family protein -
  NSQ70_RS08730 (NSQ70_08730) - 1735759..1736196 (+) 438 WP_057079489.1 hypothetical protein -
  NSQ70_RS08735 (NSQ70_08735) lexA 1736244..1736864 (-) 621 WP_007499350.1 transcriptional repressor LexA -
  NSQ70_RS08740 (NSQ70_08740) yneA 1737024..1737335 (+) 312 WP_007499348.1 cell division suppressor protein YneA -
  NSQ70_RS08745 (NSQ70_08745) - 1737353..1738000 (+) 648 WP_144665494.1 recombinase family protein -
  NSQ70_RS08750 (NSQ70_08750) - 1738070..1738300 (+) 231 WP_039167715.1 DUF896 domain-containing protein -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13830.45 Da        Isoelectric Point: 7.3218

>NTDB_id=983923 NSQ70_RS08715 WP_224564554.1 1733515..1733895(+) (nucA/comI) [Bacillus sp. FSL R5-0397]
MGALLGGFGEDRSAKGADRYDHVIQFPKERYPETGSHIQEAIRKGHSDVCTIDRNGADARRQESLKGIPTKPGFDRDEWP
MAVCLEGGKGASVQYVSPSDNRGAGSWVGHQISEYPDGKRILFIVK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=983923 NSQ70_RS08715 WP_224564554.1 1733515..1733895(+) (nucA/comI) [Bacillus sp. FSL R5-0397]
ATGGGTGCGTTATTAGGTGGTTTTGGAGAGGATCGTTCCGCAAAAGGAGCAGATCGTTATGATCATGTGATTCAATTTCC
TAAGGAACGGTATCCTGAAACAGGCAGTCATATTCAAGAAGCTATTCGAAAAGGGCACTCAGACGTGTGTACCATTGACC
GAAATGGGGCAGATGCCCGCAGGCAAGAATCATTAAAAGGAATTCCCACAAAACCTGGTTTTGACCGGGATGAATGGCCG
ATGGCGGTGTGTCTTGAAGGAGGAAAGGGGGCAAGCGTTCAATATGTCAGTCCATCAGATAATAGAGGCGCTGGTTCATG
GGTCGGGCATCAAATCAGCGAGTATCCTGACGGGAAACGAATTTTATTTATTGTTAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(29-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

58.824

94.444

0.556

Multiple sequence alignment