Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   NST15_RS11700 Genome accession   NZ_CP151991
Coordinates   2276310..2277080 (-) Length   256 a.a.
NCBI ID   WP_255233981.1    Uniprot ID   -
Organism   Bacillus sp. FSL R5-0820     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2271310..2282080
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST15_RS11680 (NST15_11680) - 2271403..2272224 (-) 822 WP_008342399.1 pyruvate, water dikinase regulatory protein -
  NST15_RS11685 (NST15_11685) - 2272250..2272888 (-) 639 WP_024423017.1 helix-turn-helix transcriptional regulator -
  NST15_RS11690 (NST15_11690) glyS 2273055..2275100 (-) 2046 WP_017367621.1 glycine--tRNA ligase subunit beta -
  NST15_RS11695 (NST15_11695) glyQ 2275093..2275980 (-) 888 WP_003217487.1 glycine--tRNA ligase subunit alpha -
  NST15_RS11700 (NST15_11700) recO 2276310..2277080 (-) 771 WP_255233981.1 DNA repair protein RecO Machinery gene
  NST15_RS11705 (NST15_11705) - 2277116..2277259 (-) 144 WP_008342408.1 YqzL family protein -
  NST15_RS11710 (NST15_11710) era 2277407..2278312 (-) 906 WP_007501305.1 GTPase Era -
  NST15_RS11715 (NST15_11715) - 2278305..2278703 (-) 399 WP_008342410.1 cytidine deaminase -
  NST15_RS11720 (NST15_11720) - 2278816..2279202 (-) 387 WP_008342413.1 diacylglycerol kinase family protein -
  NST15_RS11725 (NST15_11725) ybeY 2279180..2279659 (-) 480 WP_007501310.1 rRNA maturation RNase YbeY -
  NST15_RS11730 (NST15_11730) - 2279660..2281750 (-) 2091 WP_173408463.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29345.09 Da        Isoelectric Point: 8.7129

>NTDB_id=983868 NST15_RS11700 WP_255233981.1 2276310..2277080(-) (recO) [Bacillus sp. FSL R5-0820]
MLIKSEGIVLRTTDYGETNKIVTLLTREHGKIGVMARGAKKSNSRLSAISQPFLYGTFLIQSSTGLGTLQQGEMMESMRT
IREDLFLTAYAAYMTELLDKGTEEKKPNPYLFELLLQSLRHLNEGTDADIILFIVEVKMLSVMGLKPELDKCVHCGQKEG
QFHFSIRDNGFICRQCFSKDPYKLPLSPAAARLLRLFHYFDLSRLGQVDVKPQTKQEIRQVLDHYYEEYSGLYLKSKKFM
NQMESMKKLMDGENKS

Nucleotide


Download         Length: 771 bp        

>NTDB_id=983868 NST15_RS11700 WP_255233981.1 2276310..2277080(-) (recO) [Bacillus sp. FSL R5-0820]
ATGCTCATTAAAAGTGAAGGAATCGTCCTTAGAACAACAGATTATGGCGAAACAAACAAAATTGTCACGCTGCTCACTAG
AGAACATGGGAAAATTGGTGTGATGGCAAGAGGCGCTAAGAAATCGAACAGCCGCCTGTCAGCCATAAGCCAGCCGTTTT
TATACGGAACCTTCCTGATCCAATCATCAACAGGACTTGGAACGCTCCAGCAAGGTGAAATGATGGAAAGCATGCGGACC
ATTCGGGAAGATTTATTTCTGACCGCATATGCCGCATATATGACAGAATTACTTGATAAAGGAACAGAAGAAAAGAAGCC
AAACCCTTACTTGTTTGAACTTCTTCTTCAATCTTTACGCCATCTCAATGAAGGCACAGATGCTGATATTATTTTATTTA
TCGTAGAGGTTAAAATGCTGTCAGTGATGGGGTTGAAGCCTGAACTGGACAAATGTGTACACTGCGGTCAAAAAGAAGGG
CAGTTCCATTTCTCAATTAGAGATAACGGATTCATCTGTAGGCAATGCTTTTCTAAAGATCCATATAAACTGCCCTTATC
CCCAGCAGCAGCAAGACTGCTCCGTTTGTTTCATTATTTTGATTTATCAAGGCTTGGTCAGGTTGACGTGAAACCACAAA
CGAAACAAGAAATTCGTCAAGTGCTCGATCATTATTATGAAGAGTATTCAGGTCTTTATTTAAAATCAAAAAAATTCATG
AATCAAATGGAATCCATGAAAAAGCTAATGGACGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

75.781

100

0.758

Multiple sequence alignment