Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   NST15_RS10220 Genome accession   NZ_CP151991
Coordinates   2013022..2013657 (+) Length   211 a.a.
NCBI ID   WP_019744016.1    Uniprot ID   -
Organism   Bacillus sp. FSL R5-0820     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2008022..2018657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST15_RS10180 (NST15_10180) - 2008210..2009328 (+) 1119 WP_025207530.1 NADH-dependent flavin oxidoreductase -
  NST15_RS10185 (NST15_10185) - 2009378..2009884 (-) 507 WP_342498522.1 PTS glucose transporter subunit IIA -
  NST15_RS10190 (NST15_10190) - 2010053..2010472 (+) 420 WP_007500867.1 Hsp20/alpha crystallin family protein -
  NST15_RS10195 (NST15_10195) - 2010494..2010922 (-) 429 WP_041507038.1 YppG family protein -
  NST15_RS10200 (NST15_10200) - 2011031..2011411 (-) 381 WP_234823399.1 YppE family protein -
  NST15_RS10205 (NST15_10205) - 2011461..2011694 (-) 234 WP_224563687.1 DUF5446 family protein -
  NST15_RS10210 (NST15_10210) sspM 2011891..2011995 (+) 105 WP_017359731.1 acid-soluble spore protein SspM -
  NST15_RS10215 (NST15_10215) - 2012019..2012975 (-) 957 WP_050827322.1 DUF2515 domain-containing protein -
  NST15_RS10220 (NST15_10220) recU 2013022..2013657 (+) 636 WP_019744016.1 Holliday junction resolvase RecU Machinery gene
  NST15_RS10225 (NST15_10225) - 2013677..2016349 (+) 2673 WP_342498523.1 PBP1A family penicillin-binding protein -
  NST15_RS10230 (NST15_10230) - 2016385..2016894 (-) 510 WP_249668882.1 YpoC family protein -
  NST15_RS10235 (NST15_10235) nth 2016891..2017553 (-) 663 WP_249855689.1 endonuclease III -
  NST15_RS10240 (NST15_10240) - 2017571..2018275 (-) 705 WP_008344601.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24322.62 Da        Isoelectric Point: 9.7583

>NTDB_id=983862 NST15_RS10220 WP_019744016.1 2013022..2013657(+) (recU) [Bacillus sp. FSL R5-0820]
MIRYPNGKSYQPIQQIGTKKRISGESSYSNRGMTLEADLNETNQYYLVNGIAVIHKKPTPVQIVNVDYPKRSAAVIKEAY
FKQSSTTDYNGVYKGRYIDFEAKETKSTTSFPLKNFHNHQIEHMKQVEKQGGICFVIISAFGSVYYLSASDLFFFWERQQ
QNGRKSISKDELMEAGHLMTLGYSPRIDYIKVVETLHFSDESKHHLRSKKV

Nucleotide


Download         Length: 636 bp        

>NTDB_id=983862 NST15_RS10220 WP_019744016.1 2013022..2013657(+) (recU) [Bacillus sp. FSL R5-0820]
ATGATTCGGTATCCTAACGGAAAATCGTATCAGCCCATTCAACAAATTGGGACAAAAAAAAGAATCAGCGGCGAATCATC
TTATAGTAACCGCGGGATGACGCTTGAAGCTGACTTAAATGAAACGAACCAGTACTATTTGGTCAACGGGATCGCAGTCA
TTCATAAAAAGCCTACCCCTGTTCAAATTGTCAATGTGGATTATCCAAAAAGAAGCGCTGCTGTCATTAAAGAAGCCTAT
TTTAAACAATCCTCCACAACAGACTACAACGGGGTATACAAAGGGCGCTATATCGATTTTGAAGCAAAGGAAACCAAAAG
CACCACCTCGTTTCCGCTCAAAAATTTCCACAACCATCAAATTGAGCATATGAAACAGGTTGAAAAGCAAGGCGGTATTT
GTTTTGTTATTATATCCGCATTTGGTTCCGTTTATTATTTGTCCGCTTCTGACCTCTTCTTCTTTTGGGAGCGGCAGCAG
CAAAACGGCCGTAAATCCATTAGCAAAGATGAATTAATGGAAGCAGGCCACCTCATGACACTTGGATATTCGCCAAGAAT
TGATTATATTAAAGTAGTGGAGACACTTCATTTTTCGGATGAAAGCAAGCATCATTTACGTTCGAAAAAGGTTTAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

72.277

95.735

0.692

Multiple sequence alignment