Detailed information
Bioinformatically predicted
Overview
| Name | sinR | Type | Regulator |
| Locus tag | NSQ30_RS12605 | Genome accession | NZ_CP151990 |
| Coordinates | 2433548..2433883 (+) | Length | 111 a.a. |
| NCBI ID | WP_012010555.1 | Uniprot ID | - |
| Organism | Bacillus sp. FSL R7-0651 | ||
| Function | repression of rok; repression of degU; repression of spo0A (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2428548..2438883
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NSQ30_RS12585 (NSQ30_12585) | gcvT | 2429027..2430124 (-) | 1098 | WP_065098395.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| NSQ30_RS12590 (NSQ30_12590) | - | 2430685..2432355 (+) | 1671 | WP_342487371.1 | SNF2-related protein | - |
| NSQ30_RS12595 (NSQ30_12595) | - | 2432370..2433167 (+) | 798 | WP_065098397.1 | YqhG family protein | - |
| NSQ30_RS12600 (NSQ30_12600) | - | 2433350..2433514 (+) | 165 | WP_003217357.1 | anti-repressor SinI family protein | - |
| NSQ30_RS12605 (NSQ30_12605) | sinR | 2433548..2433883 (+) | 336 | WP_012010555.1 | transcriptional regulator SinR | Regulator |
| NSQ30_RS12610 (NSQ30_12610) | - | 2433951..2434751 (-) | 801 | WP_044140977.1 | TasA family protein | - |
| NSQ30_RS12615 (NSQ30_12615) | - | 2434810..2435382 (-) | 573 | WP_044140976.1 | signal peptidase I | - |
| NSQ30_RS12620 (NSQ30_12620) | tapA | 2435434..2435961 (-) | 528 | WP_044140975.1 | amyloid fiber anchoring/assembly protein TapA | - |
| NSQ30_RS12625 (NSQ30_12625) | - | 2436261..2436539 (+) | 279 | WP_065098439.1 | DUF3889 domain-containing protein | - |
| NSQ30_RS12630 (NSQ30_12630) | - | 2436573..2436767 (-) | 195 | WP_044140973.1 | YqzE family protein | - |
| NSQ30_RS12635 (NSQ30_12635) | comGG | 2436827..2437210 (-) | 384 | WP_044140972.1 | competence type IV pilus minor pilin ComGG | - |
| NSQ30_RS12640 (NSQ30_12640) | comGF | 2437207..2437707 (-) | 501 | WP_044140971.1 | competence type IV pilus minor pilin ComGF | - |
| NSQ30_RS12645 (NSQ30_12645) | comGE | 2437646..2437963 (-) | 318 | WP_044140968.1 | competence type IV pilus minor pilin ComGE | - |
| NSQ30_RS12650 (NSQ30_12650) | comGD | 2437947..2438393 (-) | 447 | WP_106065588.1 | competence type IV pilus minor pilin ComGD | - |
| NSQ30_RS12655 (NSQ30_12655) | comGC | 2438386..2438679 (-) | 294 | WP_003217322.1 | competence type IV pilus major pilin ComGC | Machinery gene |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 13001.59 Da Isoelectric Point: 5.2831
>NTDB_id=983803 NSQ30_RS12605 WP_012010555.1 2433548..2433883(+) (sinR) [Bacillus sp. FSL R7-0651]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLHEKDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWRKKQEEE
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLHEKDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWRKKQEEE
Nucleotide
Download Length: 336 bp
>NTDB_id=983803 NSQ30_RS12605 WP_012010555.1 2433548..2433883(+) (sinR) [Bacillus sp. FSL R7-0651]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTACACGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAGAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAGAAAAAA
GCAAGAAGAGGAGTAA
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTACACGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAGAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAGAAAAAA
GCAAGAAGAGGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sinR | Bacillus subtilis subsp. subtilis str. 168 |
94.595 |
100 |
0.946 |