Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   NSQ30_RS11450 Genome accession   NZ_CP151990
Coordinates   2224796..2225407 (+) Length   203 a.a.
NCBI ID   WP_044141132.1    Uniprot ID   A0AB34QW36
Organism   Bacillus sp. FSL R7-0651     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2219796..2230407
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ30_RS11410 (NSQ30_11410) - 2219960..2221078 (+) 1119 WP_268453954.1 NADH-dependent flavin oxidoreductase -
  NSQ30_RS11415 (NSQ30_11415) - 2221130..2221636 (-) 507 WP_003216086.1 PTS glucose transporter subunit IIA -
  NSQ30_RS11420 (NSQ30_11420) - 2221804..2222223 (+) 420 WP_003215994.1 Hsp20/alpha crystallin family protein -
  NSQ30_RS11425 (NSQ30_11425) - 2222244..2222699 (-) 456 WP_113767350.1 YppG family protein -
  NSQ30_RS11430 (NSQ30_11430) - 2222806..2223177 (-) 372 WP_044141136.1 YppE family protein -
  NSQ30_RS11435 (NSQ30_11435) - 2223235..2223468 (-) 234 WP_223251159.1 DUF5446 family protein -
  NSQ30_RS11440 (NSQ30_11440) sspM 2223665..2223769 (+) 105 WP_012010346.1 acid-soluble spore protein SspM -
  NSQ30_RS11445 (NSQ30_11445) - 2223793..2224749 (-) 957 WP_342487355.1 DUF2515 domain-containing protein -
  NSQ30_RS11450 (NSQ30_11450) recU 2224796..2225407 (+) 612 WP_044141132.1 Holliday junction resolvase RecU Machinery gene
  NSQ30_RS11455 (NSQ30_11455) - 2225451..2228177 (+) 2727 WP_268453952.1 PBP1A family penicillin-binding protein -
  NSQ30_RS11460 (NSQ30_11460) - 2228214..2228723 (-) 510 WP_342487356.1 YpoC family protein -
  NSQ30_RS11465 (NSQ30_11465) nth 2228720..2229382 (-) 663 WP_034661035.1 endonuclease III -
  NSQ30_RS11470 (NSQ30_11470) - 2229400..2230104 (-) 705 WP_065098288.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 23302.46 Da        Isoelectric Point: 8.9930

>NTDB_id=983800 NSQ30_RS11450 WP_044141132.1 2224796..2225407(+) (recU) [Bacillus sp. FSL R7-0651]
MIRYPNGKSYQPIQPIGTKKRISGESSYSNRGMTLEADLNETNQYYLVNGIAVIHKKPTPVQIVNVDYPKRSAAVIKEAY
FKQSSTTDYNGVYKGRYIDFEAKETKSTTSFPLKNFHDHQIEHMKQVEKQGGICFVIISAFGSVYYLPASDLFFFWERQK
LNGRKSISKDELMEAGHLMTLGYSPRIDYIKVVETLHFSDESE

Nucleotide


Download         Length: 612 bp        

>NTDB_id=983800 NSQ30_RS11450 WP_044141132.1 2224796..2225407(+) (recU) [Bacillus sp. FSL R7-0651]
ATGATTCGGTATCCAAACGGAAAATCGTATCAGCCCATTCAACCAATTGGGACAAAAAAAAGAATCAGCGGCGAATCCTC
TTATAGTAACCGCGGGATGACGCTTGAGGCTGACTTAAATGAAACCAACCAGTACTATTTGGTCAACGGGATCGCAGTCA
TTCATAAAAAGCCTACCCCCGTTCAAATTGTGAATGTGGATTATCCAAAAAGAAGCGCTGCTGTGATCAAAGAAGCCTAT
TTTAAACAATCATCCACAACAGACTATAATGGAGTGTACAAAGGGCGCTATATCGATTTTGAAGCAAAGGAAACCAAAAG
CACTACCTCGTTTCCGCTCAAAAATTTTCACGACCATCAAATTGAGCATATGAAACAGGTTGAAAAGCAAGGCGGTATTT
GTTTCGTTATTATATCCGCATTTGGCTCCGTTTATTATTTGCCCGCTTCAGATCTCTTTTTCTTCTGGGAGCGGCAGAAG
CTAAACGGCCGGAAATCCATTAGTAAAGACGAATTAATGGAAGCCGGCCACTTAATGACACTTGGATATTCGCCAAGAAT
TGATTATATTAAAGTAGTGGAGACACTTCATTTTTCGGATGAAAGTGAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

72.772

99.507

0.724

Multiple sequence alignment