Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   NSQ30_RS09215 Genome accession   NZ_CP151990
Coordinates   1839514..1839894 (+) Length   126 a.a.
NCBI ID   WP_223252879.1    Uniprot ID   -
Organism   Bacillus sp. FSL R7-0651     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1834514..1844894
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ30_RS09205 (NSQ30_09205) - 1835004..1838147 (+) 3144 WP_342488588.1 bifunctional cytochrome P450/NADPH--P450 reductase -
  NSQ30_RS09210 (NSQ30_09210) - 1838343..1839251 (+) 909 WP_106067596.1 trypsin-like serine protease -
  NSQ30_RS09215 (NSQ30_09215) nucA/comI 1839514..1839894 (+) 381 WP_223252879.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  NSQ30_RS09220 (NSQ30_09220) - 1840044..1840890 (+) 847 Protein_1769 STAS domain-containing protein -
  NSQ30_RS09225 (NSQ30_09225) - 1840924..1841466 (-) 543 WP_065097361.1 IseA DL-endopeptidase inhibitor family protein -
  NSQ30_RS09230 (NSQ30_09230) - 1841761..1842195 (+) 435 WP_065097362.1 hypothetical protein -
  NSQ30_RS09235 (NSQ30_09235) lexA 1842242..1842862 (-) 621 WP_003212311.1 transcriptional repressor LexA -
  NSQ30_RS09240 (NSQ30_09240) yneA 1843022..1843333 (+) 312 WP_044141409.1 cell division suppressor protein YneA -
  NSQ30_RS09245 (NSQ30_09245) - 1843351..1843998 (+) 648 WP_106067594.1 recombinase family protein -
  NSQ30_RS09250 (NSQ30_09250) - 1844068..1844298 (+) 231 WP_039167715.1 DUF896 domain-containing protein -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13887.51 Da        Isoelectric Point: 6.9684

>NTDB_id=983799 NSQ30_RS09215 WP_223252879.1 1839514..1839894(+) (nucA/comI) [Bacillus sp. FSL R7-0651]
MVTLLGGFGEEHAAKGADRYDHVIQFPKERYPETGSHIQEAIRKGHSDVCTIDRNGADARRQESLKDIPTKPGFDRDEWP
MAVCLEGGKGASVQYVSPSDNRGAGSWTGHQMSGYPDGKRILFIVK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=983799 NSQ30_RS09215 WP_223252879.1 1839514..1839894(+) (nucA/comI) [Bacillus sp. FSL R7-0651]
ATGGTCACGCTGTTAGGTGGATTTGGGGAGGAACATGCGGCAAAAGGTGCGGATCGATATGATCATGTCATTCAATTTCC
AAAGGAACGATACCCTGAAACAGGCAGTCATATTCAAGAAGCCATTCGAAAAGGGCATTCCGATGTGTGTACGATAGACC
GAAATGGAGCAGATGCCCGCAGGCAAGAATCATTAAAAGACATTCCGACTAAACCCGGATTCGACCGAGATGAGTGGCCG
ATGGCAGTTTGTCTTGAAGGAGGAAAAGGGGCGAGTGTTCAATATGTCAGCCCGTCTGATAATAGGGGAGCGGGCTCATG
GACCGGACACCAGATGAGCGGGTATCCTGATGGGAAAAGAATTTTATTTATTGTGAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(29-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

57.983

94.444

0.548

Multiple sequence alignment