Detailed information NTG0983765

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACN9LI_RS05620
• Genome accession: NZ_CP184016
• Coordinates: 1167370..1168362 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 1380
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1162370..1173362

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACN9LI_RS05590 (ACN9LI_05590)	ispD	1162431..1163141 (+)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
ACN9LI_RS05595 (ACN9LI_05595)	ispF	1163141..1163620 (+)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACN9LI_RS05600 (ACN9LI_05600)	truD	1163617..1164666 (+)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
ACN9LI_RS05605 (ACN9LI_05605)	surE	1164647..1165408 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ACN9LI_RS05610 (ACN9LI_05610)	pcm	1165402..1166028 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ACN9LI_RS05615 (ACN9LI_05615)	nlpD	1166213..1167307 (+)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
ACN9LI_RS05620 (ACN9LI_05620)	rpoS	1167370..1168362 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
ACN9LI_RS05625 (ACN9LI_05625)	-	1168533..1169084 (-)	552	WP_001179444.1	flavodoxin family protein	-
ACN9LI_RS05630 (ACN9LI_05630)	-	1169309..1170352 (+)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
ACN9LI_RS05635 (ACN9LI_05635)	ygbN	1170495..1171859 (-)	1365	WP_000104433.1	GntP family transporter	-
ACN9LI_RS05640 (ACN9LI_05640)	ygbM	1171948..1172724 (-)	777	WP_001136914.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=983765 ACN9LI_RS05620 WP_000081550.1 1167370..1168362(+) (rpoS) [Escherichia coli strain 1380]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=983765 ACN9LI_RS05620 WP_000081550.1 1167370..1168362(+) (rpoS) [Escherichia coli strain 1380]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715