Detailed information
Bioinformatically predicted
Overview
| Name | radC | Type | Machinery gene |
| Locus tag | ACN9LC_RS16870 | Genome accession | NZ_CP184007 |
| Coordinates | 3459118..3459594 (+) | Length | 158 a.a. |
| NCBI ID | WP_001186775.1 | Uniprot ID | A7ZVJ5 |
| Organism | Escherichia coli strain 1290 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 3454118..3464594
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACN9LC_RS16850 (ACN9LC_16850) | cah | 3454239..3457085 (+) | 2847 | WP_021526504.1 | calcium-binding autotransporter Cah | - |
| ACN9LC_RS16855 (ACN9LC_16855) | - | 3457156..3457351 (+) | 196 | Protein_3293 | DUF905 family protein | - |
| ACN9LC_RS16860 (ACN9LC_16860) | - | 3457469..3458287 (+) | 819 | WP_001234738.1 | DUF932 domain-containing protein | - |
| ACN9LC_RS16865 (ACN9LC_16865) | - | 3458629..3459102 (+) | 474 | WP_001350782.1 | antirestriction protein | - |
| ACN9LC_RS16870 (ACN9LC_16870) | radC | 3459118..3459594 (+) | 477 | WP_001186775.1 | JAB domain-containing protein | Machinery gene |
| ACN9LC_RS16875 (ACN9LC_16875) | - | 3459657..3459878 (+) | 222 | WP_000692345.1 | DUF987 domain-containing protein | - |
| ACN9LC_RS16880 (ACN9LC_16880) | - | 3460041..3460409 (+) | 369 | WP_001295723.1 | type IV toxin-antitoxin system YeeU family antitoxin | - |
| ACN9LC_RS16885 (ACN9LC_16885) | - | 3460499..3460876 (+) | 378 | WP_000854759.1 | TA system toxin CbtA family protein | - |
| ACN9LC_RS16890 (ACN9LC_16890) | - | 3460873..3461361 (+) | 489 | WP_000761690.1 | DUF5983 family protein | - |
| ACN9LC_RS16895 (ACN9LC_16895) | - | 3461378..3461554 (+) | 177 | WP_000839286.1 | DUF957 domain-containing protein | - |
| ACN9LC_RS16900 (ACN9LC_16900) | - | 3461660..3461809 (+) | 150 | Protein_3302 | hypothetical protein | - |
| ACN9LC_RS16905 (ACN9LC_16905) | - | 3461800..3461913 (+) | 114 | Protein_3303 | transcriptional regulator | - |
| ACN9LC_RS16910 (ACN9LC_16910) | - | 3462176..3462481 (+) | 306 | Protein_3304 | helix-turn-helix domain-containing protein | - |
Sequence
Protein
Download Length: 158 a.a. Molecular weight: 17687.30 Da Isoelectric Point: 7.1437
>NTDB_id=983724 ACN9LC_RS16870 WP_001186775.1 3459118..3459594(+) (radC) [Escherichia coli strain 1290]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEYGLL
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEYGLL
Nucleotide
Download Length: 477 bp
>NTDB_id=983724 ACN9LC_RS16870 WP_001186775.1 3459118..3459594(+) (radC) [Escherichia coli strain 1290]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGAGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAATATGGTCTGCTTTAA
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGAGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAATATGGTCTGCTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| radC | Haemophilus influenzae Rd KW20 |
55.752 |
71.519 |
0.399 |