Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   NST09_RS10310 Genome accession   NZ_CP151988
Coordinates   2023183..2023818 (+) Length   211 a.a.
NCBI ID   WP_072368256.1    Uniprot ID   A0AB39J9W8
Organism   Bacillus sp. FSL W7-1346     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2018183..2028818
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST09_RS10270 (NST09_10270) - 2018348..2019466 (+) 1119 WP_024718533.1 NADH-dependent flavin oxidoreductase -
  NST09_RS10275 (NST09_10275) - 2019515..2020021 (-) 507 WP_008344623.1 PTS glucose transporter subunit IIA -
  NST09_RS10280 (NST09_10280) - 2020190..2020609 (+) 420 WP_007500867.1 Hsp20/alpha crystallin family protein -
  NST09_RS10285 (NST09_10285) - 2020631..2021083 (-) 453 WP_017359729.1 YppG family protein -
  NST09_RS10290 (NST09_10290) - 2021192..2021563 (-) 372 WP_017359730.1 YppE family protein -
  NST09_RS10295 (NST09_10295) - 2021622..2021855 (-) 234 WP_234717153.1 DUF5446 family protein -
  NST09_RS10300 (NST09_10300) sspM 2022052..2022156 (+) 105 WP_017359731.1 acid-soluble spore protein SspM -
  NST09_RS10305 (NST09_10305) - 2022180..2023136 (-) 957 WP_017359732.1 DUF2515 domain-containing protein -
  NST09_RS10310 (NST09_10310) recU 2023183..2023818 (+) 636 WP_072368256.1 Holliday junction resolvase RecU Machinery gene
  NST09_RS10315 (NST09_10315) - 2023838..2026525 (+) 2688 WP_025207532.1 PBP1A family penicillin-binding protein -
  NST09_RS10320 (NST09_10320) - 2026561..2027070 (-) 510 WP_041507035.1 YpoC family protein -
  NST09_RS10325 (NST09_10325) nth 2027067..2027729 (-) 663 WP_008344602.1 endonuclease III -
  NST09_RS10330 (NST09_10330) - 2027747..2028451 (-) 705 WP_007500879.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24383.71 Da        Isoelectric Point: 9.7581

>NTDB_id=983678 NST09_RS10310 WP_072368256.1 2023183..2023818(+) (recU) [Bacillus sp. FSL W7-1346]
MIRYPNGKSYQPIQQIGTKKRISGESSYSNRGMTLEADLNETNQYYLVNGIAVIHKKPTPVQIVNVDYPKRSAAVIKEAY
FKQSSTTDYNGVYKGRYIDFEAKETKSTTSFPLKNFHDHQIEHMKQVEKQGGICFVIISAFGSVYYLSATDLFFFWERQQ
QNGRKSISKDELMEAGHLMTLGYSPRIDYIKVVETLHFSDDRKQHLRSKKV

Nucleotide


Download         Length: 636 bp        

>NTDB_id=983678 NST09_RS10310 WP_072368256.1 2023183..2023818(+) (recU) [Bacillus sp. FSL W7-1346]
ATGATTCGGTATCCTAACGGAAAATCGTATCAGCCCATTCAACAAATTGGGACAAAAAAAAGAATCAGCGGCGAATCATC
TTATAGTAACCGCGGGATGACGCTTGAAGCTGACTTAAATGAAACGAACCAGTACTATTTGGTCAACGGGATCGCAGTCA
TTCATAAAAAGCCTACCCCTGTTCAAATTGTCAATGTGGATTATCCAAAAAGAAGCGCTGCTGTCATTAAAGAAGCCTAT
TTTAAACAATCCTCCACAACAGACTACAACGGGGTATACAAAGGGCGTTATATCGATTTTGAAGCAAAGGAAACCAAAAG
CACCACCTCGTTTCCGCTCAAAAATTTCCACGACCATCAAATTGAGCATATGAAACAGGTTGAAAAGCAAGGCGGTATTT
GTTTTGTTATTATATCCGCATTTGGTTCCGTTTATTATTTGTCCGCTACTGACCTCTTCTTCTTTTGGGAGCGGCAGCAG
CAAAACGGCCGTAAATCCATTAGCAAAGATGAATTAATGGAAGCAGGTCACCTCATGACACTTGGATATTCGCCAAGAAT
TGATTATATTAAAGTAGTGGAGACACTTCATTTTTCGGATGACAGGAAGCAACATTTACGTTCGAAAAAGGTTTAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

73.367

94.313

0.692

Multiple sequence alignment