Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   NST09_RS08860 Genome accession   NZ_CP151988
Coordinates   1745506..1745886 (+) Length   126 a.a.
NCBI ID   WP_224559893.1    Uniprot ID   -
Organism   Bacillus sp. FSL W7-1346     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1740506..1750886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST09_RS08850 (NST09_08850) - 1742230..1743138 (+) 909 WP_025207394.1 trypsin-like serine protease -
  NST09_RS08855 (NST09_08855) - 1743285..1745279 (+) 1995 WP_342493520.1 glycosyltransferase family 39 protein -
  NST09_RS08860 (NST09_08860) nucA/comI 1745506..1745886 (+) 381 WP_224559893.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  NST09_RS08865 (NST09_08865) - 1746030..1746878 (+) 849 WP_017359585.1 STAS domain-containing protein -
  NST09_RS08870 (NST09_08870) - 1746911..1747453 (-) 543 WP_007499353.1 IseA DL-endopeptidase inhibitor family protein -
  NST09_RS08875 (NST09_08875) - 1747750..1748193 (+) 444 WP_079920359.1 hypothetical protein -
  NST09_RS08880 (NST09_08880) lexA 1748241..1748861 (-) 621 WP_007499350.1 transcriptional repressor LexA -
  NST09_RS08885 (NST09_08885) yneA 1749021..1749332 (+) 312 WP_007499348.1 cell division suppressor protein YneA -
  NST09_RS08890 (NST09_08890) - 1749350..1749997 (+) 648 WP_144740949.1 recombinase family protein -
  NST09_RS08895 (NST09_08895) - 1750067..1750297 (+) 231 WP_008343816.1 DUF896 domain-containing protein -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13758.38 Da        Isoelectric Point: 7.9019

>NTDB_id=983677 NST09_RS08860 WP_224559893.1 1745506..1745886(+) (nucA/comI) [Bacillus sp. FSL W7-1346]
MGALLGGFGEDRSAKGADRYDHVIQFPKERYPETGSHIQEAIRKGHSDVCTIDRNGADARRQESLKGIPTKPGFDRDEWP
MAVCLEGGKGASVQYVSPSDNRGAGSWVGHQISGYPDGKRILFIVK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=983677 NST09_RS08860 WP_224559893.1 1745506..1745886(+) (nucA/comI) [Bacillus sp. FSL W7-1346]
ATGGGTGCGTTATTAGGTGGTTTTGGAGAGGATCGTTCCGCAAAAGGGGCAGATCGTTATGATCATGTGATTCAATTTCC
TAAGGAACGGTATCCTGAAACAGGCAGTCATATTCAAGAAGCTATTCGAAAAGGGCACTCAGATGTGTGTACCATTGACC
GAAATGGGGCAGATGCCCGCAGGCAAGAATCATTAAAAGGAATTCCCACAAAACCTGGTTTTGACCGGGATGAATGGCCG
ATGGCAGTGTGTCTTGAAGGAGGAAAGGGGGCGAGCGTTCAATATGTCAGTCCATCAGATAATAGAGGCGCTGGTTCATG
GGTAGGGCATCAAATCAGCGGGTATCCTGACGGGAAACGAATTTTATTTATTGTCAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(29-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

58.824

94.444

0.556

Multiple sequence alignment