Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   NST09_RS07105 Genome accession   NZ_CP151988
Coordinates   1394854..1395132 (+) Length   92 a.a.
NCBI ID   WP_008345129.1    Uniprot ID   A0AAD0MKH3
Organism   Bacillus sp. FSL W7-1346     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1389854..1400132
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST09_RS07085 (NST09_07085) - 1390457..1391452 (-) 996 WP_048001599.1 hypothetical protein -
  NST09_RS07090 (NST09_07090) - 1392025..1393257 (-) 1233 WP_342493475.1 aminopeptidase -
  NST09_RS07095 (NST09_07095) - 1393364..1393495 (-) 132 WP_003210922.1 protein YkpC -
  NST09_RS07100 (NST09_07100) mreBH 1393570..1394577 (-) 1008 WP_017359401.1 rod-share determining protein MreBH -
  NST09_RS07105 (NST09_07105) abrB 1394854..1395132 (+) 279 WP_008345129.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  NST09_RS07110 (NST09_07110) - 1395277..1396566 (+) 1290 WP_008345127.1 ATP-binding protein -
  NST09_RS07115 (NST09_07115) - 1396594..1397436 (+) 843 WP_125588941.1 gamma-glutamylcyclotransferase family protein -
  NST09_RS07120 (NST09_07120) - 1397474..1398142 (+) 669 WP_008345123.1 TrkA family potassium uptake protein -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10320.00 Da        Isoelectric Point: 4.5447

>NTDB_id=983672 NST09_RS07105 WP_008345129.1 1394854..1395132(+) (abrB) [Bacillus sp. FSL W7-1346]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSMEFFIDGEKIVLKKYQPEGVCLMTGEITSENHEYGNGQITLSAEGAE
LLLKELQEALQQ

Nucleotide


Download         Length: 279 bp        

>NTDB_id=983672 NST09_RS07105 WP_008345129.1 1394854..1395132(+) (abrB) [Bacillus sp. FSL W7-1346]
TTGAAATCTATCGGAGTTGTAAGAAAAGTAGATGAACTAGGGCGTATTGTGATGCCAATCGAATTGAGAAGAGCACTTGA
TATCGCTATTAAAGACAGTATGGAATTTTTTATAGATGGAGAGAAAATCGTCTTGAAAAAATATCAGCCAGAGGGCGTCT
GCCTGATGACTGGTGAGATTACTTCTGAGAACCACGAGTATGGAAATGGTCAAATTACATTAAGCGCTGAAGGCGCAGAA
CTGCTGCTAAAAGAGCTTCAAGAAGCCCTTCAGCAGTAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

100

0.554

Multiple sequence alignment