Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   NST09_RS00255 Genome accession   NZ_CP151988
Coordinates   47206..47496 (-) Length   96 a.a.
NCBI ID   WP_087975202.1    Uniprot ID   -
Organism   Bacillus sp. FSL W7-1346     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 42206..52496
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST09_RS00215 (NST09_00215) - 42239..42568 (+) 330 WP_012008640.1 cyclic-di-AMP receptor -
  NST09_RS00220 (NST09_00220) - 42581..43021 (+) 441 WP_342493236.1 YaaR family protein -
  NST09_RS00225 (NST09_00225) holB 43033..44022 (+) 990 WP_007496231.1 DNA polymerase III subunit delta' -
  NST09_RS00230 (NST09_00230) - 44025..44852 (+) 828 WP_007496230.1 stage 0 sporulation family protein -
  NST09_RS00235 (NST09_00235) yabA 44867..45220 (+) 354 WP_007496228.1 DNA replication initiation control protein YabA -
  NST09_RS00240 (NST09_00240) - 45276..46019 (+) 744 WP_017359328.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  NST09_RS00245 (NST09_00245) - 46006..46305 (+) 300 WP_019744059.1 GIY-YIG nuclease family protein -
  NST09_RS00250 (NST09_00250) rsmI 46280..47161 (+) 882 WP_008341890.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  NST09_RS00255 (NST09_00255) abrB 47206..47496 (-) 291 WP_087975202.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  NST09_RS00260 (NST09_00260) metG 48016..50016 (+) 2001 WP_008341884.1 methionine--tRNA ligase -
  NST09_RS00265 (NST09_00265) - 50098..50865 (+) 768 WP_156061458.1 TatD family hydrolase -
  NST09_RS00270 (NST09_00270) - 51110..52312 (+) 1203 WP_342493237.1 ubiquitin-like domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10853.65 Da        Isoelectric Point: 7.9655

>NTDB_id=983648 NST09_RS00255 WP_087975202.1 47206..47496(-) (abrB) [Bacillus sp. FSL W7-1346]
MKMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLANGKLVLSREG
AEQIINEIQNQLQSQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=983648 NST09_RS00255 WP_087975202.1 47206..47496(-) (abrB) [Bacillus sp. FSL W7-1346]
ATGAAGATGAAATCTACAGGTATTGTACGTAAAGTTGACGAATTAGGACGCGTGGTGATTCCAATCGAGCTTCGCCGTAC
GTTAGGAATCGCAGAAAAAGACGCTTTGGAAATTTATGTTGATGATGAAAAAATTATCCTAAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACAGGTGAAGTATCAGACGATAACCTTAAACTTGCTAATGGTAAATTAGTTCTTAGCCGTGAAGGT
GCAGAGCAAATCATTAACGAAATCCAAAACCAACTTCAATCACAAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)

AbrB C-terminal domain (AbrB_C)

(55-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

93.75

100

0.938

Multiple sequence alignment