Detailed information    

insolico Bioinformatically predicted

Overview


Name   spo0A   Type   Regulator
Locus tag   NSQ11_RS11295 Genome accession   NZ_CP151987
Coordinates   2204081..2204884 (-) Length   267 a.a.
NCBI ID   WP_081114343.1    Uniprot ID   -
Organism   Bacillus sp. FSL W7-1582     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context


Location: 2199081..2209884
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ11_RS11280 (NSQ11_11280) - 2201297..2201533 (+) 237 WP_017357960.1 DUF2627 domain-containing protein -
  NSQ11_RS11285 (NSQ11_11285) - 2201567..2202304 (-) 738 WP_008342228.1 glycerophosphodiester phosphodiesterase -
  NSQ11_RS11290 (NSQ11_11290) - 2202531..2203631 (-) 1101 WP_007501159.1 Rap family tetratricopeptide repeat protein -
  NSQ11_RS11295 (NSQ11_11295) spo0A 2204081..2204884 (-) 804 WP_081114343.1 sporulation transcription factor Spo0A Regulator
  NSQ11_RS11300 (NSQ11_11300) spoIVB 2205168..2206445 (-) 1278 WP_017367575.1 SpoIVB peptidase -
  NSQ11_RS11305 (NSQ11_11305) recN 2206644..2208377 (-) 1734 WP_035390783.1 DNA repair protein RecN Machinery gene
  NSQ11_RS11310 (NSQ11_11310) argR 2208412..2208861 (-) 450 WP_007501163.1 transcriptional regulator ArgR -

Sequence


Protein


Download         Length: 267 a.a.        Molecular weight: 29895.40 Da        Isoelectric Point: 6.3918

>NTDB_id=983618 NSQ11_RS11295 WP_081114343.1 2204081..2204884(-) (spo0A) [Bacillus sp. FSL W7-1582]
MEKIKVCVADDNRELVGLLTEYIEGQEDMEVLGVAYNGQECLTLFKDKEPDVLLLDIIMPHLDGLAVLERLRENNEMTKQ
PSVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNGTQVSHRSSSIQNSVLRSKTEPKRKNLDASITTI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMSKAKPTNSEFIAMVADRLRLEHRAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=983618 NSQ11_RS11295 WP_081114343.1 2204081..2204884(-) (spo0A) [Bacillus sp. FSL W7-1582]
GTGGAGAAAATTAAAGTGTGTGTAGCTGATGACAATCGAGAACTTGTTGGCCTTTTGACAGAGTATATTGAGGGACAGGA
AGATATGGAAGTACTTGGCGTGGCGTATAATGGTCAGGAATGTCTGACATTATTTAAAGATAAAGAGCCCGACGTTCTCC
TCTTAGATATTATCATGCCTCATTTAGACGGTCTTGCTGTACTGGAACGCCTCCGTGAAAACAATGAAATGACCAAACAG
CCAAGTGTCATTATGCTGACGGCTTTCGGACAAGAAGACGTAACGAAAAAAGCGGTCGATTTGGGCGCATCCTATTTCAT
TTTGAAACCATTCGATATGGAAAACCTCGTAGGTCATATTCGTCAAGTCAGTGGAAACGGCACACAAGTCAGCCATCGAT
CTTCATCTATCCAAAACAGTGTCCTTCGCAGCAAAACTGAACCGAAACGTAAGAACTTAGATGCGAGCATTACGACAATT
ATTCATGAGATTGGCGTGCCAGCTCATATTAAAGGCTATTTATACTTAAGAGAAGCCATTTCGATGGTGTACAATGATAT
TGAACTACTCGGCAGTATTACAAAAGTATTGTACCCAGACATTGCAAAGAAATTTAACACGACAGCCAGCAGGGTAGAAC
GAGCGATTCGTCATGCCATTGAAGTGGCTTGGAGCAGAGGGAATATTGACTCCATTTCCTCACTCTTTGGTTACACAGTC
AGCATGTCAAAAGCCAAACCAACCAATTCAGAATTTATTGCGATGGTGGCTGATCGTCTGCGTTTAGAGCATAGAGCAAG
CTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

88.433

100

0.888


Multiple sequence alignment