Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   NSQ11_RS07005 Genome accession   NZ_CP151987
Coordinates   1371654..1372115 (-) Length   153 a.a.
NCBI ID   WP_008356877.1    Uniprot ID   -
Organism   Bacillus sp. FSL W7-1582     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1366654..1377115
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ11_RS06980 (NSQ11_06980) - 1367058..1367942 (+) 885 WP_017359428.1 cation diffusion facilitator family transporter -
  NSQ11_RS06985 (NSQ11_06985) - 1368007..1368159 (-) 153 WP_008348040.1 hypothetical protein -
  NSQ11_RS06990 (NSQ11_06990) - 1368460..1368999 (+) 540 WP_007498690.1 RDD family protein -
  NSQ11_RS06995 (NSQ11_06995) - 1369124..1370434 (+) 1311 WP_017359426.1 MFS transporter -
  NSQ11_RS07000 (NSQ11_07000) - 1370508..1371416 (+) 909 WP_008348035.1 chemotaxis protein -
  NSQ11_RS07005 (NSQ11_07005) kre 1371654..1372115 (-) 462 WP_008356877.1 YkyB family protein Regulator
  NSQ11_RS07010 (NSQ11_07010) - 1372335..1373231 (-) 897 WP_081114960.1 helix-turn-helix domain-containing protein -
  NSQ11_RS07015 (NSQ11_07015) - 1373345..1374283 (+) 939 WP_017359424.1 EamA family transporter -
  NSQ11_RS07020 (NSQ11_07020) - 1374445..1374660 (-) 216 WP_017359423.1 hypothetical protein -
  NSQ11_RS07025 (NSQ11_07025) - 1374828..1375004 (+) 177 WP_008348014.1 hypothetical protein -
  NSQ11_RS07030 (NSQ11_07030) - 1375232..1376509 (-) 1278 WP_008348012.1 MFS transporter -
  NSQ11_RS07035 (NSQ11_07035) - 1376583..1377080 (-) 498 WP_008348009.1 L,D-transpeptidase family protein -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 17711.30 Da        Isoelectric Point: 10.2452

>NTDB_id=983609 NSQ11_RS07005 WP_008356877.1 1371654..1372115(-) (kre) [Bacillus sp. FSL W7-1582]
MDDYAHTKDIEPTAENIAKAIYTVNRHAKTAPNPKFLYLLKKRALQKLLQEGKGRKVGLHFSNNPKYSQQQSDVLIEIGD
YYFHLPPTKEDFEFLPHLGNLNQSYRNPKANMSLNRAKQILQTYVGLKEKPAATKQKSHYTKPVFKRLGESYF

Nucleotide


Download         Length: 462 bp        

>NTDB_id=983609 NSQ11_RS07005 WP_008356877.1 1371654..1372115(-) (kre) [Bacillus sp. FSL W7-1582]
ATGGACGATTATGCTCATACTAAAGACATAGAACCTACAGCAGAAAACATCGCAAAAGCCATTTATACTGTTAACCGCCA
TGCTAAAACCGCACCAAATCCCAAGTTTCTTTATCTTTTGAAAAAACGTGCGCTGCAAAAACTATTGCAAGAAGGTAAAG
GAAGAAAAGTGGGCCTACATTTCTCTAACAATCCCAAATATAGTCAACAACAGTCCGACGTGCTGATTGAAATTGGAGAT
TATTATTTTCATCTGCCACCAACTAAAGAAGACTTCGAATTTTTGCCACACTTAGGAAATTTAAATCAATCATATCGCAA
TCCAAAAGCGAATATGTCATTAAATCGAGCGAAACAAATACTTCAAACGTATGTCGGTTTAAAAGAAAAACCTGCCGCCA
CAAAACAAAAATCACATTATACAAAACCCGTCTTCAAACGGCTCGGGGAAAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

75.974

100

0.765

Multiple sequence alignment