Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpC   Type   Regulator
Locus tag   NSQ11_RS06835 Genome accession   NZ_CP151987
Coordinates   1334856..1336961 (-) Length   701 a.a.
NCBI ID   WP_058213826.1    Uniprot ID   -
Organism   Bacillus sp. FSL W7-1582     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1329856..1341961
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ11_RS06810 (NSQ11_06810) - 1330275..1330517 (+) 243 WP_008346101.1 aspartyl-phosphate phosphatase Spo0E family protein -
  NSQ11_RS06815 (NSQ11_06815) - 1330569..1332068 (-) 1500 WP_008346092.1 ATP-binding protein -
  NSQ11_RS06820 (NSQ11_06820) - 1332273..1332728 (+) 456 WP_003211701.1 MarR family transcriptional regulator -
  NSQ11_RS06825 (NSQ11_06825) motB 1332915..1333682 (-) 768 WP_024719648.1 flagellar motor protein MotB -
  NSQ11_RS06830 (NSQ11_06830) motA 1333675..1334469 (-) 795 WP_008346088.1 flagellar motor stator protein MotA -
  NSQ11_RS06835 (NSQ11_06835) clpC 1334856..1336961 (-) 2106 WP_058213826.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  NSQ11_RS06840 (NSQ11_06840) - 1337207..1338247 (+) 1041 WP_041092377.1 membrane protein -
  NSQ11_RS06845 (NSQ11_06845) queC 1338526..1339182 (+) 657 WP_008348090.1 7-cyano-7-deazaguanine synthase QueC -
  NSQ11_RS06850 (NSQ11_06850) queD 1339183..1339623 (+) 441 WP_008348088.1 6-carboxytetrahydropterin synthase QueD -
  NSQ11_RS06855 (NSQ11_06855) queE 1339616..1340347 (+) 732 WP_058213825.1 7-carboxy-7-deazaguanine synthase QueE -
  NSQ11_RS06860 (NSQ11_06860) queF 1340363..1340860 (+) 498 WP_003211403.1 preQ(1) synthase -
  NSQ11_RS06865 (NSQ11_06865) - 1341119..1341337 (+) 219 WP_017367128.1 hypothetical protein -
  NSQ11_RS06870 (NSQ11_06870) - 1341462..1341650 (-) 189 WP_003211747.1 DUF2187 family protein -

Sequence

Protein


Download         Length: 701 a.a.        Molecular weight: 78194.80 Da        Isoelectric Point: 5.1807

>NTDB_id=983608 NSQ11_RS06835 WP_058213826.1 1334856..1336961(-) (clpC) [Bacillus sp. FSL W7-1582]
MRCQHCQVNEATIRLNMQVNSSRSQMVLCEDCYTSLMEQSKMKMGPNLFGGGSFFSEQAGHATSQERPKQKGLLDELGRN
LTDGAHAGLIDPVIGRDEEVTRVIEILNRRNKNNPVLIGEPGVGKTAIAEGLALKIANGDVPNKLKNKQVYLLDVSSLVA
NTGVRGQFEERMKQLIKELQSRKNIILFVDEIHLLVGAGSAEGSMDAGNILKPALARGELQLVGATTLKEYRQIEKDAAL
ERRFQPVMVDEPTQDEAFEILKGIQDKYEAYHGVTYSDEAIKACVQLSSRYIQDRHLPDKAIDLMDEAGSKANLSIDAAS
EDELTNRLAQIAAEKQAALNEERYEKAAKLRDEEEAIEARLQNKTNDKEHVVTAEDIQSIVEQKTGIPVGKLQADEQTKM
KEIDVRLKARVIGQEHAVEKVAKAVKRSRAGLKSKHRPTGSFLFVGPTGVGKTELSKTLAEELFGSKEAIIRLDMSEYME
KHSVSKIIGSPPGYVGHDEAGQLTEKVRRKPYSIILLDEIEKAHPDVQHMFLQIMEDGRLTDSQGRTVSFKDTVIIMTSN
AGSTDKKAVKVGFQSEQEEAIEEQSLIDSLSAYFKPEFLNRFDSIIQFDSLDKDDLVKIVDLLLKDLSEQLKEQNLTVHV
TNEAKEKIAELGYHPAFGARPLRRTIQEHVEDQMTDILLEEEQLTGFTVDVEHDEIVVKKS

Nucleotide


Download         Length: 2106 bp        

>NTDB_id=983608 NSQ11_RS06835 WP_058213826.1 1334856..1336961(-) (clpC) [Bacillus sp. FSL W7-1582]
ATGCGTTGTCAACATTGTCAAGTAAATGAAGCAACTATTCGCCTGAATATGCAAGTAAATTCGTCCCGTAGCCAAATGGT
TTTATGTGAAGACTGCTATACCTCTTTGATGGAACAGTCAAAAATGAAAATGGGTCCTAACCTTTTCGGAGGCGGTTCAT
TCTTCTCTGAGCAAGCAGGACATGCGACGAGCCAAGAGCGGCCTAAACAAAAAGGCTTACTCGATGAGCTTGGCCGGAAC
TTAACGGATGGCGCACATGCTGGTTTAATCGATCCTGTCATTGGCCGTGATGAAGAAGTCACAAGAGTCATTGAGATTTT
AAATAGAAGAAATAAAAACAATCCTGTCCTCATTGGTGAACCTGGTGTTGGTAAAACGGCCATAGCCGAAGGACTAGCAC
TAAAAATTGCAAATGGAGATGTACCAAATAAATTAAAGAACAAACAAGTTTATTTATTAGATGTCTCTTCACTTGTGGCA
AACACAGGTGTACGTGGTCAATTTGAGGAACGGATGAAGCAATTAATCAAAGAATTGCAAAGCCGTAAAAATATCATCTT
ATTCGTTGATGAAATTCATCTTCTTGTAGGCGCAGGCTCTGCCGAAGGGTCAATGGATGCCGGAAACATTTTGAAACCAG
CTCTAGCTCGAGGGGAACTGCAGCTAGTAGGTGCGACAACATTAAAAGAGTATCGTCAAATTGAAAAAGATGCTGCCCTT
GAACGCAGGTTCCAGCCCGTCATGGTTGATGAGCCAACACAGGATGAAGCATTCGAGATATTAAAAGGCATTCAAGATAA
GTATGAAGCCTATCATGGCGTCACCTATTCTGACGAAGCCATTAAAGCGTGTGTTCAATTATCTTCGCGGTATATTCAAG
ACCGCCACTTGCCGGATAAAGCCATTGATTTAATGGATGAAGCAGGTTCAAAAGCGAATCTCTCCATTGATGCAGCAAGT
GAAGATGAATTAACAAACCGTCTTGCGCAAATTGCCGCTGAAAAACAAGCTGCTTTAAATGAAGAACGATATGAAAAAGC
AGCGAAGCTTCGAGACGAAGAAGAAGCGATTGAAGCGAGATTGCAAAACAAAACAAATGACAAAGAACATGTCGTCACAG
CTGAGGACATTCAGTCGATTGTAGAACAAAAAACAGGTATCCCTGTCGGCAAACTGCAAGCAGACGAACAAACAAAAATG
AAAGAAATTGATGTGCGCTTAAAAGCCCGCGTCATTGGTCAGGAACATGCCGTTGAAAAAGTGGCGAAAGCCGTAAAAAG
AAGCAGAGCCGGCTTAAAATCAAAACACAGACCAACTGGCTCCTTCCTTTTCGTTGGACCAACAGGCGTCGGGAAAACCG
AATTGTCTAAAACATTAGCGGAAGAATTATTTGGCTCAAAAGAAGCGATCATTCGTTTAGATATGAGTGAGTACATGGAG
AAACACTCCGTGTCCAAAATCATCGGTTCTCCTCCTGGTTACGTTGGACATGATGAAGCCGGCCAGCTCACGGAAAAGGT
TCGCAGAAAACCATACAGCATCATTTTGCTCGATGAAATCGAAAAAGCGCACCCTGATGTCCAGCATATGTTCCTTCAAA
TCATGGAAGATGGCCGTCTAACAGACAGCCAAGGCAGAACCGTCAGCTTTAAAGACACAGTCATCATTATGACAAGTAAC
GCTGGCAGCACAGATAAAAAAGCAGTCAAAGTCGGATTCCAGTCTGAACAAGAAGAAGCCATCGAAGAACAATCATTGAT
TGATTCACTGAGCGCTTATTTCAAACCGGAATTCTTGAACCGTTTTGACAGCATCATTCAGTTTGATTCATTAGATAAAG
ACGATTTAGTCAAAATTGTGGATCTTCTGCTCAAAGATTTGTCAGAGCAGTTAAAAGAACAAAATCTAACTGTTCACGTC
ACAAACGAAGCGAAAGAAAAAATCGCTGAACTTGGTTATCATCCAGCATTTGGGGCTCGTCCGTTACGAAGAACGATTCA
AGAGCATGTTGAGGATCAAATGACGGACATCTTGCTTGAAGAAGAACAACTTACTGGATTTACAGTCGATGTTGAACATG
ACGAAATTGTTGTGAAAAAGAGCTAA

Domains

Predicted by InterproScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(116-245)

AAA lid domain (AAA_lid_9)

(253-353)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(611-686)

AAA domain (Cdc48 subfamily) (AAA_2)

(437-605)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpC Lactococcus lactis subsp. cremoris KW2

56.969

100

0.601
  clpE Streptococcus mutans UA159

56.51

100

0.601
  clpE Streptococcus pneumoniae Rx1

55.846

100

0.579
  clpE Streptococcus pneumoniae D39

55.846

100

0.579
  clpE Streptococcus pneumoniae R6

55.846

100

0.579
  clpE Streptococcus pneumoniae TIGR4

55.846

100

0.579
  clpC Bacillus subtilis subsp. subtilis str. 168

53.651

95.72

0.514
  clpC Lactococcus lactis subsp. lactis strain DGCC12653

46.855

90.728

0.425
  clpC Streptococcus thermophilus LMD-9

44.427

92.154

0.409
  clpC Streptococcus thermophilus LMG 18311

44.272

92.154

0.408
  clpC Streptococcus pneumoniae TIGR4

44.479

90.442

0.402
  clpC Streptococcus pneumoniae Rx1

44.674

89.729

0.401
  clpC Streptococcus pneumoniae D39

44.674

89.729

0.401
  clpC Streptococcus mutans UA159

44.127

89.872

0.397

Multiple sequence alignment