Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   NSU13_RS10215 Genome accession   NZ_CP151986
Coordinates   2011730..2012365 (+) Length   211 a.a.
NCBI ID   WP_034280474.1    Uniprot ID   -
Organism   Bacillus sp. FSL M8-0049     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2006730..2017365
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSU13_RS10175 (NSU13_10175) - 2006876..2007994 (+) 1119 WP_231122787.1 NADH-dependent flavin oxidoreductase -
  NSU13_RS10180 (NSU13_10180) - 2008052..2008558 (-) 507 WP_034280784.1 PTS glucose transporter subunit IIA -
  NSU13_RS10185 (NSU13_10185) - 2008728..2009147 (+) 420 WP_034280483.1 Hsp20/alpha crystallin family protein -
  NSU13_RS10190 (NSU13_10190) - 2009168..2009629 (-) 462 WP_342489498.1 YppG family protein -
  NSU13_RS10195 (NSU13_10195) - 2009738..2010118 (-) 381 WP_224426683.1 YppE family protein -
  NSU13_RS10200 (NSU13_10200) - 2010168..2010401 (-) 234 WP_224426684.1 DUF5446 family protein -
  NSU13_RS10205 (NSU13_10205) sspM 2010599..2010703 (+) 105 WP_024422772.1 acid-soluble spore protein SspM -
  NSU13_RS10210 (NSU13_10210) - 2010727..2011683 (-) 957 WP_061109278.1 DUF2515 domain-containing protein -
  NSU13_RS10215 (NSU13_10215) recU 2011730..2012365 (+) 636 WP_034280474.1 Holliday junction resolvase RecU Machinery gene
  NSU13_RS10220 (NSU13_10220) - 2012385..2015093 (+) 2709 WP_342489499.1 PBP1A family penicillin-binding protein -
  NSU13_RS10225 (NSU13_10225) - 2015130..2015639 (-) 510 WP_065214700.1 YpoC family protein -
  NSU13_RS10230 (NSU13_10230) nth 2015636..2016298 (-) 663 WP_024422776.1 endonuclease III -
  NSU13_RS10235 (NSU13_10235) - 2016316..2017020 (-) 705 WP_120208135.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24315.71 Da        Isoelectric Point: 9.8310

>NTDB_id=983555 NSU13_RS10215 WP_034280474.1 2011730..2012365(+) (recU) [Bacillus sp. FSL M8-0049]
MIRYPNGKSYQPIQQIGTKKRISGESSYSNRGMTLEADLNETNQYYLVNGIAVIHKKPTPVQIVNVDYPKRSAAVIKEAY
FKQSSTTDYNGVYKGRYIDFEAKETKSTTSFPLKNFHDHQIEHMKQVEKQGGICFVIISAFGSVYYLPASDLFFFWERQK
KNGRKSISKDELMEAGHIMTLGYSPRIDYIKVVETLHFSDESKQQLRSKKV

Nucleotide


Download         Length: 636 bp        

>NTDB_id=983555 NSU13_RS10215 WP_034280474.1 2011730..2012365(+) (recU) [Bacillus sp. FSL M8-0049]
ATGATTCGGTATCCAAACGGAAAATCGTATCAGCCCATACAACAAATTGGGACAAAAAAAAGAATCAGCGGCGAATCCTC
TTATAGTAACCGCGGGATGACGCTTGAGGCTGATTTAAATGAAACAAACCAATACTATTTGGTCAACGGGATCGCAGTCA
TTCATAAAAAGCCTACCCCAGTTCAAATTGTGAATGTGGATTATCCAAAAAGAAGTGCTGCTGTCATTAAAGAAGCCTAT
TTTAAACAATCATCCACAACAGACTATAACGGGGTTTACAAAGGCCGCTATATCGATTTTGAAGCAAAGGAAACCAAAAG
CACTACCTCGTTTCCGCTCAAAAATTTCCACGACCATCAAATTGAGCATATGAAACAGGTTGAAAAGCAAGGCGGTATTT
GTTTCGTTATTATATCCGCTTTTGGCTCCGTTTATTATTTGCCCGCTTCAGATCTCTTTTTCTTCTGGGAGCGGCAGAAA
AAAAATGGCCGTAAATCCATTAGCAAAGACGAATTAATGGAAGCTGGCCACATAATGACACTTGGATATTCGCCAAGAAT
TGATTATATTAAAGTAGTGGAGACACTTCATTTTTCGGATGAAAGCAAGCAGCAATTACGTTCGAAAAAGGTTTAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

73.267

95.735

0.701

Multiple sequence alignment