Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   NSU13_RS07800 Genome accession   NZ_CP151986
Coordinates   1523639..1524541 (+) Length   300 a.a.
NCBI ID   WP_224426534.1    Uniprot ID   -
Organism   Bacillus sp. FSL M8-0049     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1518639..1529541
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSU13_RS07780 (NSU13_07780) - 1519302..1521041 (+) 1740 WP_341053327.1 glycosyltransferase -
  NSU13_RS07785 (NSU13_07785) - 1521038..1521313 (+) 276 WP_003211418.1 FlhB-like flagellar biosynthesis protein -
  NSU13_RS07790 (NSU13_07790) sucC 1521490..1522650 (+) 1161 WP_024426972.1 ADP-forming succinate--CoA ligase subunit beta -
  NSU13_RS07795 (NSU13_07795) sucD 1522673..1523575 (+) 903 WP_007499624.1 succinate--CoA ligase subunit alpha -
  NSU13_RS07800 (NSU13_07800) dprA 1523639..1524541 (+) 903 WP_224426534.1 DNA-processing protein DprA Machinery gene
  NSU13_RS07805 (NSU13_07805) topA 1524735..1526810 (+) 2076 WP_342489972.1 type I DNA topoisomerase -
  NSU13_RS07810 (NSU13_07810) trmFO 1526881..1528185 (+) 1305 WP_024424183.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  NSU13_RS07815 (NSU13_07815) xerC 1528248..1529165 (+) 918 WP_034281771.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 34042.37 Da        Isoelectric Point: 8.8768

>NTDB_id=983550 NSU13_RS07800 WP_224426534.1 1523639..1524541(+) (dprA) [Bacillus sp. FSL M8-0049]
MYNVSERMIFHRLKGLISPSLLTKWWKVDPELYINEETHHFKQDRALQTIDFTRLKQAEENEFPIFQHIVQAYLKQNIHM
IPITSPLYPSTLKNIYDPPPVLFLKGNVSYLNEEKSLGVVGTRAPSSYGEACVKKIVGELVKEEWMIVSGLAKGIDGLAH
KECIRKKGKTIGIIAGGFQHVYPKEHAQMAQYMGEHHLLLSEHPPYVKPEKWHFPMRNRLISALTKGTIVIQCKEKSGSL
ITAYQALEQGKEVFAVAGSIFDSNSTGPARLIQQGAKLVHSTKDILEEFSFHSVQYTELS

Nucleotide


Download         Length: 903 bp        

>NTDB_id=983550 NSU13_RS07800 WP_224426534.1 1523639..1524541(+) (dprA) [Bacillus sp. FSL M8-0049]
ATGTACAACGTGTCCGAAAGAATGATTTTTCACCGCTTAAAAGGCCTCATCTCACCCTCATTATTAACAAAATGGTGGAA
AGTCGATCCTGAACTATATATAAATGAAGAAACACATCATTTTAAACAGGATCGAGCATTACAAACGATCGACTTTACCC
GCTTAAAACAAGCTGAAGAAAATGAATTCCCCATTTTTCAACACATCGTTCAAGCCTATTTAAAGCAAAACATTCACATG
ATTCCCATCACATCACCCTTATATCCCAGCACATTAAAAAATATTTATGATCCTCCCCCTGTGTTATTCCTAAAAGGAAA
CGTATCATATTTAAATGAAGAAAAAAGTTTAGGTGTAGTCGGCACGCGAGCTCCATCGTCTTATGGAGAAGCATGTGTGA
AGAAAATTGTTGGTGAGCTTGTCAAGGAAGAGTGGATGATTGTCAGTGGTTTAGCTAAAGGAATCGATGGACTGGCACAT
AAAGAGTGCATCAGGAAAAAAGGGAAAACAATCGGCATTATAGCAGGCGGCTTTCAGCATGTATACCCAAAAGAACATGC
ACAAATGGCTCAATACATGGGCGAACATCATTTGCTTTTGTCAGAGCACCCGCCTTATGTCAAACCAGAAAAGTGGCATT
TTCCAATGAGAAATCGTTTAATTAGTGCATTGACGAAAGGGACCATCGTGATTCAGTGCAAAGAAAAGAGCGGTTCTCTT
ATTACAGCCTATCAAGCGCTTGAGCAAGGCAAAGAAGTATTTGCGGTTGCTGGATCCATCTTTGATTCTAATTCCACAGG
TCCGGCAAGACTCATTCAGCAGGGGGCAAAGCTTGTTCATTCCACAAAGGATATTTTAGAGGAATTCTCCTTCCACAGCG
TTCAATATACTGAACTCTCATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

54.355

95.667

0.52
  dprA Legionella pneumophila strain ERS1305867

37.705

100

0.383

Multiple sequence alignment