Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   NSS80_RS06955 Genome accession   NZ_CP151985
Coordinates   1367551..1368012 (-) Length   153 a.a.
NCBI ID   WP_008356877.1    Uniprot ID   -
Organism   Bacillus sp. FSL M8-0350     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1362551..1373012
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSS80_RS06930 (NSS80_06930) - 1362812..1362964 (-) 153 WP_162842519.1 hypothetical protein -
  NSS80_RS06935 (NSS80_06935) - 1363267..1363806 (+) 540 WP_024424707.1 RDD family protein -
  NSS80_RS06945 (NSS80_06945) - 1365221..1366531 (+) 1311 WP_041118114.1 MFS transporter -
  NSS80_RS06950 (NSS80_06950) - 1366605..1367513 (+) 909 WP_024424709.1 chemotaxis protein -
  NSS80_RS06955 (NSS80_06955) kre 1367551..1368012 (-) 462 WP_008356877.1 YkyB family protein Regulator
  NSS80_RS06960 (NSS80_06960) - 1368191..1369108 (-) 918 WP_317222064.1 AraC family transcriptional regulator -
  NSS80_RS06965 (NSS80_06965) - 1369222..1370118 (+) 897 WP_041117239.1 EamA family transporter -
  NSS80_RS06970 (NSS80_06970) - 1370271..1370486 (-) 216 WP_024424712.1 hypothetical protein -
  NSS80_RS06975 (NSS80_06975) - 1370746..1372023 (-) 1278 WP_024426859.1 MFS transporter -
  NSS80_RS06980 (NSS80_06980) - 1372097..1372594 (-) 498 WP_034623332.1 L,D-transpeptidase family protein -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 17711.30 Da        Isoelectric Point: 10.2452

>NTDB_id=983486 NSS80_RS06955 WP_008356877.1 1367551..1368012(-) (kre) [Bacillus sp. FSL M8-0350]
MDDYAHTKDIEPTAENIAKAIYTVNRHAKTAPNPKFLYLLKKRALQKLLQEGKGRKVGLHFSNNPKYSQQQSDVLIEIGD
YYFHLPPTKEDFEFLPHLGNLNQSYRNPKANMSLNRAKQILQTYVGLKEKPAATKQKSHYTKPVFKRLGESYF

Nucleotide


Download         Length: 462 bp        

>NTDB_id=983486 NSS80_RS06955 WP_008356877.1 1367551..1368012(-) (kre) [Bacillus sp. FSL M8-0350]
ATGGACGATTATGCTCATACTAAAGACATAGAACCTACAGCAGAAAACATCGCAAAAGCCATTTATACTGTTAACCGCCA
TGCTAAAACCGCACCAAACCCCAAGTTTCTTTATCTTTTGAAAAAACGCGCGCTGCAAAAACTATTGCAAGAAGGTAAAG
GAAGAAAAGTGGGCCTACATTTCTCTAACAATCCCAAGTATAGTCAACAACAGTCCGACGTGCTGATTGAAATTGGAGAT
TATTATTTTCACCTGCCACCAACGAAAGAAGACTTCGAATTTTTGCCACACTTAGGAAATTTAAATCAATCATATCGCAA
TCCGAAAGCGAATATGTCATTAAACCGAGCAAAGCAAATACTTCAAACGTATGTCGGTTTAAAAGAAAAACCTGCCGCCA
CAAAACAAAAATCACATTACACAAAACCCGTCTTCAAACGTCTCGGGGAAAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

75.974

100

0.765

Multiple sequence alignment