Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpC   Type   Regulator
Locus tag   NSS80_RS06765 Genome accession   NZ_CP151985
Coordinates   1327876..1329978 (-) Length   700 a.a.
NCBI ID   WP_041116451.1    Uniprot ID   -
Organism   Bacillus sp. FSL M8-0350     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1322876..1334978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSS80_RS06740 (NSS80_06740) - 1323293..1323535 (+) 243 WP_024424676.1 aspartyl-phosphate phosphatase Spo0E family protein -
  NSS80_RS06745 (NSS80_06745) - 1323582..1325087 (-) 1506 WP_034281538.1 ATP-binding protein -
  NSS80_RS06750 (NSS80_06750) - 1325292..1325747 (+) 456 WP_034281539.1 MarR family transcriptional regulator -
  NSS80_RS06755 (NSS80_06755) motB 1325941..1326711 (-) 771 WP_034281540.1 flagellar motor protein MotB -
  NSS80_RS06760 (NSS80_06760) motA 1326704..1327498 (-) 795 WP_024424680.1 flagellar motor stator protein MotA -
  NSS80_RS06765 (NSS80_06765) clpC 1327876..1329978 (-) 2103 WP_041116451.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  NSS80_RS06770 (NSS80_06770) - 1330223..1331266 (+) 1044 WP_034623360.1 membrane protein -
  NSS80_RS06775 (NSS80_06775) queC 1331542..1332198 (+) 657 WP_024424683.1 7-cyano-7-deazaguanine synthase QueC -
  NSS80_RS06780 (NSS80_06780) queD 1332199..1332639 (+) 441 WP_034281544.1 6-carboxytetrahydropterin synthase QueD -
  NSS80_RS06785 (NSS80_06785) queE 1332632..1333363 (+) 732 WP_041116452.1 7-carboxy-7-deazaguanine synthase QueE -
  NSS80_RS06790 (NSS80_06790) queF 1333379..1333876 (+) 498 WP_024426839.1 preQ(1) synthase -
  NSS80_RS06795 (NSS80_06795) - 1334139..1334357 (-) 219 WP_342498446.1 hypothetical protein -
  NSS80_RS06800 (NSS80_06800) - 1334354..1334710 (-) 357 WP_061109758.1 winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 700 a.a.        Molecular weight: 77889.51 Da        Isoelectric Point: 5.0736

>NTDB_id=983485 NSS80_RS06765 WP_041116451.1 1327876..1329978(-) (clpC) [Bacillus sp. FSL M8-0350]
MRCQHCQVNEATIRLNMQVNSSRSQMVLCEDCYTSLMEQSKMKMGPQLFGGSSFFSQAASHAPNMEQPKQKGLLDELGRN
LTDGANAGLIDPVIGRDEEVARVIEILNRRNKNNPVLIGEPGVGKTAIAEGLALKIASGDVPNKLKNKQIYLLDVSSLVA
NTGVRGQFEERMKQLIKELQSRKNIILFVDEIHLLVGAGSAEGSMDAGNILKPALARGELQLVGATTLKEYRQIEKDAAL
ERRFQPVIVDEPTQDEAIDILKGIQDKYEAYHGVTYSDEAIKACVQLSSRYIQDRHLPDKAIDLMDEAGSKANLSIDAAS
ADELTNRLAQIAAEKQAALKEEQYEKAAKLRDEEEAIEARLQNKTTEKEHIVTAEDIQAIVEQKTGIPVGKLQADEQTKM
KEIDVRLKARVIGQEHAVDKVAKAVKRSRAGLKSKHRPTGSFLFVGPTGVGKTELSKTLAEELFGSRDAIIRLDMSEYME
KHSVSKLIGSPPGYVGHDEAGQLTEKVRRKPYSIILLDEIEKAHPDVQHMFLQIMEDGRLTDSQGRTVSFKDTVIIMTSN
AGSADKTVKVGFQSDQEEAIEEQSLIDSLSSYFKPEFLNRFDSIIQFESLDRDDLVKIVDLLLNELSEQLKEQNLTVHVT
NEAKEKIAELGYHPAFGARPLRRTIQEHVEDQMTEILLEEEQLSGFTVDVEHDEIVVKKG

Nucleotide


Download         Length: 2103 bp        

>NTDB_id=983485 NSS80_RS06765 WP_041116451.1 1327876..1329978(-) (clpC) [Bacillus sp. FSL M8-0350]
ATGCGTTGTCAACATTGTCAAGTAAATGAAGCAACTATTCGCCTGAATATGCAAGTAAATTCGTCCCGGAGCCAAATGGT
TTTATGTGAAGACTGCTATACCTCTTTGATGGAGCAGTCAAAAATGAAAATGGGACCTCAGCTTTTTGGAGGAAGTTCAT
TCTTCTCTCAGGCAGCAAGTCATGCCCCAAACATGGAGCAGCCAAAGCAAAAAGGCTTACTCGATGAGCTTGGCCGTAAC
TTAACAGATGGAGCAAATGCTGGTTTAATTGATCCAGTCATTGGCCGAGATGAAGAAGTCGCAAGAGTCATTGAGATTTT
AAATAGAAGAAATAAAAATAACCCTGTTCTTATTGGTGAACCAGGTGTTGGGAAAACAGCGATCGCAGAAGGACTCGCGC
TCAAAATTGCGAGCGGCGATGTGCCAAATAAATTAAAGAACAAACAAATCTATTTATTAGATGTCTCCTCACTTGTCGCA
AACACAGGTGTACGCGGTCAATTTGAGGAAAGAATGAAGCAGTTAATCAAAGAACTGCAAAGCCGTAAAAATATCATCTT
ATTTGTAGATGAAATCCACCTTCTTGTGGGCGCAGGATCTGCAGAAGGATCAATGGATGCTGGAAACATTTTAAAACCAG
CCCTTGCAAGAGGCGAGCTGCAGCTAGTAGGTGCGACGACATTAAAAGAATATCGCCAAATTGAAAAAGATGCTGCACTC
GAACGGCGCTTCCAGCCCGTTATCGTAGATGAGCCAACACAAGATGAAGCAATCGACATCTTAAAAGGCATTCAAGATAA
ATACGAGGCCTATCATGGTGTCACCTATTCAGATGAAGCAATCAAAGCGTGCGTTCAATTATCTTCGCGGTATATTCAAG
ACCGTCATTTGCCGGATAAAGCCATTGATTTAATGGATGAAGCTGGTTCAAAAGCGAACCTCTCCATTGATGCAGCAAGT
GCAGATGAGCTGACAAACCGACTAGCGCAAATTGCCGCAGAAAAACAAGCTGCGCTAAAAGAAGAACAATATGAAAAAGC
AGCGAAGCTTCGCGATGAAGAAGAAGCCATTGAAGCAAGACTTCAAAACAAAACAACTGAAAAAGAGCATATCGTTACAG
CAGAGGACATTCAGGCCATTGTGGAACAAAAAACAGGCATTCCTGTCGGGAAACTCCAAGCAGACGAACAAACCAAAATG
AAAGAAATTGACGTCCGTCTAAAAGCACGAGTGATTGGACAGGAACATGCGGTTGATAAAGTGGCGAAAGCCGTGAAAAG
AAGCAGAGCTGGTTTAAAATCGAAACATAGACCAACAGGCTCCTTCCTTTTCGTTGGACCAACAGGTGTCGGGAAAACCG
AATTGTCTAAAACGTTAGCTGAAGAATTATTCGGTTCAAGAGATGCGATCATTCGTTTAGATATGAGTGAGTACATGGAA
AAACACTCTGTGTCCAAACTCATCGGTTCTCCTCCTGGTTACGTTGGACATGATGAAGCTGGCCAGCTTACTGAAAAAGT
GCGCAGAAAACCATACAGCATCATTTTGCTGGATGAAATCGAAAAAGCACACCCAGATGTACAGCACATGTTCCTGCAAA
TCATGGAAGACGGCCGCTTAACAGACAGCCAAGGCAGAACGGTCAGCTTTAAAGATACAGTCATCATCATGACAAGTAAC
GCAGGCAGCGCAGATAAAACGGTCAAGGTCGGCTTCCAGTCTGATCAAGAAGAAGCGATTGAGGAACAATCACTCATTGA
TTCACTAAGCAGCTACTTCAAACCAGAATTTTTGAACCGTTTTGACAGCATCATTCAGTTTGAATCATTAGACAGAGATG
ATTTAGTGAAGATTGTTGATCTTCTGCTCAATGAGCTGTCAGAGCAATTAAAAGAGCAGAATTTAACAGTCCATGTCACA
AATGAAGCGAAAGAAAAAATCGCAGAGCTTGGATATCACCCTGCATTTGGTGCTCGTCCACTTCGAAGAACCATCCAAGA
GCACGTTGAAGACCAAATGACGGAGATCCTGCTTGAAGAGGAGCAGCTTTCTGGATTTACTGTGGATGTTGAACATGACG
AAATCGTCGTAAAAAAAGGATAA

Domains

Predicted by InterproScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(116-248)

AAA lid domain (AAA_lid_9)

(253-353)

AAA domain (Cdc48 subfamily) (AAA_2)

(437-604)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(610-687)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpC Lactococcus lactis subsp. cremoris KW2

56.64

100

0.597
  clpE Streptococcus mutans UA159

56.334

100

0.597
  clpE Streptococcus pneumoniae Rx1

55.525

100

0.574
  clpE Streptococcus pneumoniae D39

55.525

100

0.574
  clpE Streptococcus pneumoniae R6

55.525

100

0.574
  clpE Streptococcus pneumoniae TIGR4

55.525

100

0.574
  clpC Bacillus subtilis subsp. subtilis str. 168

53.582

95.714

0.513
  clpC Lactococcus lactis subsp. lactis strain DGCC12653

47.327

90.857

0.43
  clpC Streptococcus thermophilus LMD-9

46.13

92.286

0.426
  clpC Streptococcus thermophilus LMG 18311

45.975

92.286

0.424
  clpC Streptococcus pneumoniae TIGR4

44.93

91.571

0.411
  clpC Streptococcus pneumoniae Rx1

45.126

90.857

0.41
  clpC Streptococcus pneumoniae D39

45.126

90.857

0.41
  clpC Streptococcus mutans UA159

44.15

91.571

0.404

Multiple sequence alignment