Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   NSS80_RS01870 Genome accession   NZ_CP151985
Coordinates   348445..348873 (-) Length   142 a.a.
NCBI ID   WP_041116609.1    Uniprot ID   -
Organism   Bacillus sp. FSL M8-0350     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 343445..353873
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSS80_RS01840 (NSS80_01840) - 343605..343934 (+) 330 WP_317222586.1 YckD family protein -
  NSS80_RS01845 (NSS80_01845) - 343980..344744 (-) 765 WP_034624002.1 MBL fold metallo-hydrolase -
  NSS80_RS01850 (NSS80_01850) - 344860..345276 (+) 417 WP_317222234.1 Lrp/AsnC family transcriptional regulator -
  NSS80_RS01855 (NSS80_01855) - 345305..346111 (+) 807 WP_252050065.1 AAC(3) family N-acetyltransferase -
  NSS80_RS01860 (NSS80_01860) - 346113..346499 (-) 387 WP_034283302.1 competence protein ComJ -
  NSS80_RS01865 (NSS80_01865) - 346620..348317 (-) 1698 WP_041116607.1 methyl-accepting chemotaxis protein -
  NSS80_RS01870 (NSS80_01870) nucA/comI 348445..348873 (-) 429 WP_041116609.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  NSS80_RS01875 (NSS80_01875) - 349241..351310 (+) 2070 WP_041116611.1 hydantoinase/oxoprolinase family protein -
  NSS80_RS01880 (NSS80_01880) - 351300..353288 (+) 1989 WP_041116613.1 hydantoinase B/oxoprolinase family protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 16005.98 Da        Isoelectric Point: 6.2215

>NTDB_id=983468 NSS80_RS01870 WP_041116609.1 348445..348873(-) (nucA/comI) [Bacillus sp. FSL M8-0350]
MKLLKMFLLLLLIVIGVATGYIQLEQGKQETANSSYDKTIHFPSDRYPETAKHIEEAIDEGHSSICTIDRKHSDEQRDRS
LHGVPTKRGYDRDEWPMAMCKEGGTGASVKYVRPSDNRGAGSWVSHQLSDDPDGTRIQFIID

Nucleotide


Download         Length: 429 bp        

>NTDB_id=983468 NSS80_RS01870 WP_041116609.1 348445..348873(-) (nucA/comI) [Bacillus sp. FSL M8-0350]
ATGAAACTTCTTAAAATGTTTCTCTTGCTTTTATTGATTGTTATTGGTGTAGCAACAGGCTATATCCAGCTGGAGCAAGG
GAAACAAGAGACAGCGAATTCATCTTATGACAAAACGATTCATTTTCCATCAGACCGCTATCCCGAAACAGCCAAGCACA
TAGAAGAAGCCATTGATGAAGGTCATTCGTCCATTTGTACAATTGACCGTAAACATAGTGATGAGCAGAGGGACCGATCA
TTACATGGCGTTCCAACAAAGCGCGGGTATGATCGTGACGAATGGCCAATGGCGATGTGCAAAGAAGGAGGCACAGGAGC
TTCTGTCAAATATGTACGCCCTTCTGATAATAGAGGCGCAGGCTCGTGGGTAAGTCATCAATTATCGGATGATCCAGACG
GCACAAGAATCCAATTTATCATCGATTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(46-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

66.667

80.282

0.535

Multiple sequence alignment