Detailed information    

insolico Bioinformatically predicted

Overview

Name   micB   Type   Regulator
Locus tag   R8507_RS05845 Genome accession   NZ_AP026925
Coordinates   1150109..1151458 (-) Length   449 a.a.
NCBI ID   WP_000886210.1    Uniprot ID   A0A064BZM9
Organism   Streptococcus pneumoniae strain PZ900700097     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1145109..1156458
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8507_RS05815 (PC0094_11410) cpoA 1145268..1146311 (-) 1044 WP_050205387.1 alpha-galactosylglucosyldiacylglycerol synthase -
  R8507_RS05820 (PC0094_11420) - 1146513..1147769 (+) 1257 WP_317642865.1 ISL3 family transposase -
  R8507_RS05825 (PC0094_11430) - 1147886..1148662 (-) 777 WP_044791794.1 potassium channel family protein -
  R8507_RS05830 (PC0094_11440) - 1148709..1148963 (-) 255 WP_001809704.1 type II toxin-antitoxin system RelE/ParE family toxin -
  R8507_RS05835 (PC0094_11450) relB 1148965..1149207 (-) 243 WP_000208080.1 type II toxin-antitoxin system RelB family antitoxin -
  R8507_RS05840 (PC0094_11460) vicX 1149298..1150107 (-) 810 WP_001289493.1 MBL fold metallo-hydrolase Regulator
  R8507_RS05845 (PC0094_11470) micB 1150109..1151458 (-) 1350 WP_000886210.1 cell wall metabolism sensor histidine kinase VicK Regulator
  R8507_RS05850 (PC0094_11480) micA 1151451..1152155 (-) 705 WP_000722076.1 response regulator YycF Regulator
  R8507_RS05855 (PC0094_11490) mutY 1152210..1153385 (-) 1176 WP_000886145.1 A/G-specific adenine glycosylase -
  R8507_RS05860 - 1153482..1153607 (+) 126 WP_001818232.1 hypothetical protein -
  R8507_RS05865 (PC0094_11500) - 1153713..1155383 (-) 1671 WP_000845279.1 formate--tetrahydrofolate ligase -
  R8507_RS05870 (PC0094_11510) coaB 1155613..1156302 (+) 690 WP_000699500.1 phosphopantothenate--cysteine ligase -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 51712.42 Da        Isoelectric Point: 4.9706

>NTDB_id=98346 R8507_RS05845 WP_000886210.1 1150109..1151458(-) (micB) [Streptococcus pneumoniae strain PZ900700097]
MLDLLKQTIFTRDFIFILILLGFILVVTLLLLENRRDNIQLKQINQKVKDLIAGDYSKVLDMQGGSEITNITNNLNDLSE
VIRLTQENLEQESKRLNSILFYMTDGVLATNRRGQIIMINDTAKKQLGLVKEDVLNRSILELLKIEENYELRDLITQSPE
LLLDSQDINGEYLNLRVRFALIRRESGFISGLVAVLHDTTEQEKEERERRLFVSNVSHELRTPLTSVKSYLEALDEGALC
ETVAPDFIKVSLDETNRMMRMVTDLLHLSRIDNATSHLDVELINFTAFITFILNRFDKMKGQEKEKKYELVRDYPINSIW
MEIDTDKMTQVVDNILNNAIKYSPDGGKITVRMKTTEDQMILSISDHGLGIPKQDLPRIFDRFYRVDRARSRAQGGTGLG
LSIAKEIIKQHKGFIWAKSEYGKGSTFTIVLPYDKDAVKEEVWEDEVED

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=98346 R8507_RS05845 WP_000886210.1 1150109..1151458(-) (micB) [Streptococcus pneumoniae strain PZ900700097]
ATGCTTGATTTACTGAAACAAACCATTTTTACCAGAGATTTTATCTTTATCCTGATTTTGTTAGGTTTCATCCTTGTTGT
GACCCTCTTATTACTGGAAAATAGACGTGATAATATTCAGTTGAAGCAAATCAATCAAAAGGTTAAAGATTTGATTGCAG
GAGATTATTCCAAGGTTCTTGATATGCAAGGTGGGTCTGAAATCACTAATATTACCAATAATTTGAATGACTTGTCGGAG
GTTATTCGTCTCACTCAGGAAAATCTAGAACAAGAGAGTAAGAGGCTAAATAGTATTCTGTTTTATATGACAGATGGGGT
TCTTGCGACCAACCGTCGGGGTCAGATTATCATGATTAACGATACAGCCAAGAAGCAACTGGGGTTGGTTAAGGAAGATG
TTCTGAATAGAAGCATTTTGGAATTGCTCAAGATAGAAGAAAACTATGAATTGCGTGATTTGATTACCCAAAGTCCAGAA
TTGTTGCTAGATTCCCAAGATATCAATGGCGAATATTTGAACCTTCGAGTTCGCTTTGCCTTGATACGTCGAGAGTCTGG
CTTTATTTCAGGTTTGGTGGCTGTTTTGCATGATACGACGGAGCAGGAGAAGGAAGAACGCGAACGAAGACTCTTTGTTT
CCAATGTTAGCCATGAGTTACGGACTCCTCTGACTAGCGTAAAATCCTATCTTGAAGCCTTGGATGAGGGGGCTTTGTGT
GAAACTGTAGCACCAGACTTTATCAAGGTTTCTCTTGATGAAACCAACCGTATGATGCGCATGGTGACGGATCTCCTCCA
TCTTTCACGTATTGATAATGCTACCAGTCATCTAGATGTGGAACTGATTAACTTCACTGCTTTTATTACCTTTATCCTCA
ATCGTTTTGACAAGATGAAAGGACAGGAAAAGGAGAAAAAATATGAGTTGGTGAGAGATTATCCCATCAATTCTATCTGG
ATGGAAATTGATACAGATAAGATGACGCAGGTTGTCGACAATATTTTAAATAATGCTATTAAGTATTCGCCAGATGGGGG
TAAAATCACTGTCAGAATGAAGACAACTGAAGACCAGATGATTTTATCCATTTCTGACCACGGTTTGGGGATTCCTAAGC
AGGATTTACCACGTATCTTTGACCGTTTCTATCGTGTGGATCGTGCTAGAAGTCGTGCACAAGGTGGTACAGGTCTAGGA
CTGTCTATCGCTAAAGAAATTATCAAACAACATAAGGGCTTTATTTGGGCCAAGAGTGAATACGGCAAGGGTTCAACCTT
TACCATTGTGCTCCCTTATGATAAGGATGCAGTGAAAGAAGAAGTATGGGAGGATGAAGTAGAAGACTAG

Domains

Predicted by InterproScan.

PAS fold (PAS)

(98-198)

His Kinase A (phospho-acceptor) domain (HisKA)

(209-273)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(324-434)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A064BZM9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  micB Streptococcus pneumoniae Cp1015

99.777

100

0.998
  vicK Streptococcus mutans UA159

69.9

89.532

0.626

Multiple sequence alignment