Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   NSQ34_RS11500 Genome accession   NZ_CP151984
Coordinates   2254966..2255736 (-) Length   256 a.a.
NCBI ID   WP_268413827.1    Uniprot ID   -
Organism   Bacillus sp. FSL P2-0069     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2249966..2260736
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ34_RS11480 (NSQ34_11480) - 2250059..2250880 (-) 822 WP_008342399.1 pyruvate, water dikinase regulatory protein -
  NSQ34_RS11485 (NSQ34_11485) - 2250906..2251544 (-) 639 WP_024423017.1 helix-turn-helix transcriptional regulator -
  NSQ34_RS11490 (NSQ34_11490) glyS 2251712..2253757 (-) 2046 WP_120208221.1 glycine--tRNA ligase subunit beta -
  NSQ34_RS11495 (NSQ34_11495) glyQ 2253750..2254637 (-) 888 WP_012010611.1 glycine--tRNA ligase subunit alpha -
  NSQ34_RS11500 (NSQ34_11500) recO 2254966..2255736 (-) 771 WP_268413827.1 DNA repair protein RecO Machinery gene
  NSQ34_RS11505 (NSQ34_11505) - 2255771..2255914 (-) 144 WP_003217288.1 YqzL family protein -
  NSQ34_RS11510 (NSQ34_11510) era 2256063..2256968 (-) 906 WP_007501305.1 GTPase Era -
  NSQ34_RS11515 (NSQ34_11515) - 2256961..2257359 (-) 399 WP_008356263.1 cytidine deaminase -
  NSQ34_RS11520 (NSQ34_11520) - 2257473..2257859 (-) 387 WP_034280126.1 diacylglycerol kinase family protein -
  NSQ34_RS11525 (NSQ34_11525) ybeY 2257837..2258316 (-) 480 WP_024423021.1 rRNA maturation RNase YbeY -
  NSQ34_RS11530 (NSQ34_11530) - 2258317..2260404 (-) 2088 WP_193510700.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29263.94 Da        Isoelectric Point: 8.4348

>NTDB_id=983439 NSQ34_RS11500 WP_268413827.1 2254966..2255736(-) (recO) [Bacillus sp. FSL P2-0069]
MLIKSEGIVLRTTDYGETNKIVTLLTREHGKIGVMARGAKKSNSRLSAISQPFLYGTFLIQSSTGLGTLQQGEMIESMRA
IREDLFLTAYAAYMTELMDKGTEEKKPNPYLFELLLQSLRHLNEGTDADIILFILEVKMLSVMGMKPELDQCVHCGQKEG
QFHFSIRDNGFICQNCFSKDPYKLPLSPAAARLLRLFHYFDLSRLGQVDVKQQTKQEIRQVLDHYYDEYSGLYLKSKKFM
NQMESMKKLMGGENKS

Nucleotide


Download         Length: 771 bp        

>NTDB_id=983439 NSQ34_RS11500 WP_268413827.1 2254966..2255736(-) (recO) [Bacillus sp. FSL P2-0069]
ATGCTCATTAAAAGTGAAGGAATCGTCCTTAGAACAACAGATTATGGCGAAACAAACAAAATTGTCACGCTGCTCACTAG
AGAACATGGAAAAATTGGCGTGATGGCAAGAGGCGCTAAAAAATCAAACAGCCGCCTGTCAGCTATAAGCCAGCCGTTTT
TATACGGCACCTTTCTCATCCAATCATCAACAGGACTTGGAACGCTCCAGCAAGGCGAAATGATTGAAAGTATGCGGGCC
ATTCGGGAAGACTTATTTCTGACCGCATATGCCGCATATATGACGGAATTGATGGATAAAGGGACAGAAGAAAAAAAGCC
AAACCCTTATTTGTTTGAGCTTCTGCTTCAATCTCTGCGTCATCTCAACGAAGGTACAGATGCTGATATTATTTTATTTA
TCTTAGAGGTCAAAATGTTATCAGTGATGGGGATGAAGCCTGAACTTGATCAATGTGTGCACTGTGGTCAAAAAGAAGGG
CAGTTCCATTTCTCAATAAGAGATAACGGCTTCATTTGCCAAAATTGTTTTTCGAAAGATCCATATAAACTGCCCTTATC
CCCCGCAGCTGCAAGGCTGCTCCGTTTGTTTCATTATTTTGATTTATCAAGGCTTGGTCAGGTTGATGTGAAACAGCAGA
CGAAACAAGAAATTCGTCAAGTGCTTGATCACTACTATGACGAATATTCCGGCCTCTATTTAAAATCAAAAAAATTCATG
AATCAGATGGAATCCATGAAAAAGCTAATGGGCGGGGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

75

100

0.75

Multiple sequence alignment