Detailed information
Bioinformatically predicted
Overview
| Name | sinR | Type | Regulator |
| Locus tag | NSQ34_RS11165 | Genome accession | NZ_CP151984 |
| Coordinates | 2199403..2199738 (+) | Length | 111 a.a. |
| NCBI ID | WP_024422969.1 | Uniprot ID | - |
| Organism | Bacillus sp. FSL P2-0069 | ||
| Function | repression of rok; repression of degU; repression of spo0A (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2194403..2204738
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NSQ34_RS11145 (NSQ34_11145) | gcvT | 2194882..2195979 (-) | 1098 | WP_024427995.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| NSQ34_RS11150 (NSQ34_11150) | - | 2196541..2198211 (+) | 1671 | WP_024427994.1 | SNF2-related protein | - |
| NSQ34_RS11155 (NSQ34_11155) | - | 2198226..2199023 (+) | 798 | WP_024427993.1 | YqhG family protein | - |
| NSQ34_RS11160 (NSQ34_11160) | - | 2199205..2199369 (+) | 165 | WP_073206269.1 | anti-repressor SinI family protein | - |
| NSQ34_RS11165 (NSQ34_11165) | sinR | 2199403..2199738 (+) | 336 | WP_024422969.1 | transcriptional regulator SinR | Regulator |
| NSQ34_RS11170 (NSQ34_11170) | - | 2199806..2200606 (-) | 801 | WP_024422970.1 | TasA family protein | - |
| NSQ34_RS11175 (NSQ34_11175) | - | 2200661..2201233 (-) | 573 | WP_024422971.1 | signal peptidase I | - |
| NSQ34_RS11180 (NSQ34_11180) | tapA | 2201286..2201813 (-) | 528 | WP_041117967.1 | amyloid fiber anchoring/assembly protein TapA | - |
| NSQ34_RS11185 (NSQ34_11185) | - | 2202113..2202391 (+) | 279 | WP_061109527.1 | DUF3889 domain-containing protein | - |
| NSQ34_RS11190 (NSQ34_11190) | - | 2202426..2202620 (-) | 195 | WP_024422974.1 | YqzE family protein | - |
| NSQ34_RS11195 (NSQ34_11195) | comGG | 2202680..2203063 (-) | 384 | WP_041117969.1 | competence type IV pilus minor pilin ComGG | - |
| NSQ34_RS11200 (NSQ34_11200) | comGF | 2203060..2203587 (-) | 528 | WP_264315971.1 | competence type IV pilus minor pilin ComGF | - |
| NSQ34_RS11205 (NSQ34_11205) | comGE | 2203499..2203813 (-) | 315 | WP_264315972.1 | competence type IV pilus minor pilin ComGE | - |
| NSQ34_RS11210 (NSQ34_11210) | comGD | 2203797..2204243 (-) | 447 | WP_176966991.1 | competence type IV pilus minor pilin ComGD | - |
| NSQ34_RS11215 (NSQ34_11215) | comGC | 2204236..2204529 (-) | 294 | WP_024422977.1 | competence type IV pilus major pilin ComGC | Machinery gene |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 12978.56 Da Isoelectric Point: 5.0026
>NTDB_id=983436 NSQ34_RS11165 WP_024422969.1 2199403..2199738(+) (sinR) [Bacillus sp. FSL P2-0069]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNEKDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWRKKQEEE
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNEKDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWRKKQEEE
Nucleotide
Download Length: 336 bp
>NTDB_id=983436 NSQ34_RS11165 WP_024422969.1 2199403..2199738(+) (sinR) [Bacillus sp. FSL P2-0069]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTTTTAAACGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAGAAAAAA
GCAAGAAGAGGAGTAA
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTTTTAAACGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAGAAAAAA
GCAAGAAGAGGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sinR | Bacillus subtilis subsp. subtilis str. 168 |
94.595 |
100 |
0.946 |