Detailed information    

insolico Bioinformatically predicted

Overview


Name   spo0A   Type   Regulator
Locus tag   NSQ34_RS10970 Genome accession   NZ_CP151984
Coordinates   2164670..2165473 (-) Length   267 a.a.
NCBI ID   WP_024422935.1    Uniprot ID   A0AAX0Z9Q1
Organism   Bacillus sp. FSL P2-0069     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context


Location: 2159670..2170473
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ34_RS10955 (NSQ34_10955) - 2161875..2162111 (+) 237 WP_024422931.1 DUF2627 domain-containing protein -
  NSQ34_RS10960 (NSQ34_10960) - 2162148..2162885 (-) 738 WP_024422932.1 glycerophosphodiester phosphodiesterase -
  NSQ34_RS10965 (NSQ34_10965) - 2163113..2164213 (-) 1101 WP_176966999.1 Rap family tetratricopeptide repeat protein -
  NSQ34_RS10970 (NSQ34_10970) spo0A 2164670..2165473 (-) 804 WP_024422935.1 sporulation transcription factor Spo0A Regulator
  NSQ34_RS10975 (NSQ34_10975) spoIVB 2165759..2167036 (-) 1278 WP_034280268.1 SpoIVB peptidase -
  NSQ34_RS10980 (NSQ34_10980) recN 2167237..2168970 (-) 1734 WP_024428012.1 DNA repair protein RecN Machinery gene
  NSQ34_RS10985 (NSQ34_10985) argR 2169004..2169453 (-) 450 WP_024422938.1 transcriptional regulator ArgR -
  NSQ34_RS10990 (NSQ34_10990) - 2169617..2170471 (-) 855 WP_025092991.1 TlyA family RNA methyltransferase -

Sequence


Protein


Download         Length: 267 a.a.        Molecular weight: 29932.46 Da        Isoelectric Point: 6.3918

>NTDB_id=983434 NSQ34_RS10970 WP_024422935.1 2164670..2165473(-) (spo0A) [Bacillus sp. FSL P2-0069]
MEKIKVCVADDNRELVGLLTEYIEGQEDMEVLGVAYNGQECLTLFKDKEPDVLLLDIIMPHLDGLAVLERLRENNEMTKQ
PSVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNGTQVTHRSSSIQNSVLRNKPEPKRKNLDASITTI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMSKAKPTNSEFIAMVADRLRLEHRAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=983434 NSQ34_RS10970 WP_024422935.1 2164670..2165473(-) (spo0A) [Bacillus sp. FSL P2-0069]
GTGGAGAAAATTAAAGTGTGTGTAGCTGATGACAATCGAGAGCTTGTTGGCCTTTTGACAGAGTACATTGAGGGACAGGA
AGATATGGAAGTACTTGGCGTGGCGTATAATGGTCAGGAATGCCTGACATTATTTAAAGATAAAGAGCCCGACGTTCTCC
TCTTAGACATTATTATGCCTCATTTAGACGGTCTTGCTGTACTAGAACGCCTCCGTGAAAACAATGAAATGACAAAACAG
CCAAGTGTGATTATGCTAACGGCATTTGGACAAGAAGATGTCACGAAAAAAGCAGTTGATTTGGGCGCATCCTATTTCAT
TTTAAAGCCATTTGATATGGAAAACCTAGTAGGTCATATTCGTCAAGTCAGTGGAAACGGCACACAAGTTACCCATCGCT
CTTCATCAATCCAAAACAGTGTTCTTCGTAACAAACCTGAACCGAAACGTAAAAACTTAGATGCGAGCATTACGACCATT
ATTCATGAGATTGGCGTGCCCGCTCATATTAAAGGCTATTTATACTTAAGAGAAGCAATTTCTATGGTGTACAATGACAT
TGAGCTTCTCGGAAGCATCACTAAAGTGTTGTACCCAGACATTGCAAAGAAATTTAACACGACTGCCAGCAGGGTAGAAC
GAGCGATTCGTCATGCCATTGAAGTCGCATGGAGTAGAGGAAACATTGATTCCATTTCCTCACTCTTTGGTTATACTGTC
AGCATGTCAAAAGCGAAACCAACCAATTCAGAATTTATTGCCATGGTAGCTGATCGTCTGCGTTTAGAGCATAGAGCAAG
CTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

88.06

100

0.884


Multiple sequence alignment