Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   NSQ34_RS10010 Genome accession   NZ_CP151984
Coordinates   1991145..1991756 (+) Length   203 a.a.
NCBI ID   WP_065214702.1    Uniprot ID   -
Organism   Bacillus sp. FSL P2-0069     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1986145..1996756
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ34_RS09970 (NSQ34_09970) - 1986291..1987409 (+) 1119 WP_024428115.1 NADH-dependent flavin oxidoreductase -
  NSQ34_RS09975 (NSQ34_09975) - 1987467..1987973 (-) 507 WP_034280784.1 PTS glucose transporter subunit IIA -
  NSQ34_RS09980 (NSQ34_09980) - 1988143..1988562 (+) 420 WP_176967037.1 Hsp20/alpha crystallin family protein -
  NSQ34_RS09985 (NSQ34_09985) - 1988583..1989044 (-) 462 WP_061109277.1 YppG family protein -
  NSQ34_RS09990 (NSQ34_09990) - 1989153..1989533 (-) 381 WP_224426683.1 YppE family protein -
  NSQ34_RS09995 (NSQ34_09995) - 1989583..1989816 (-) 234 WP_223251001.1 DUF5446 family protein -
  NSQ34_RS10000 (NSQ34_10000) sspM 1990014..1990118 (+) 105 WP_024422772.1 acid-soluble spore protein SspM -
  NSQ34_RS10005 (NSQ34_10005) - 1990142..1991098 (-) 957 WP_061109278.1 DUF2515 domain-containing protein -
  NSQ34_RS10010 (NSQ34_10010) recU 1991145..1991756 (+) 612 WP_065214702.1 Holliday junction resolvase RecU Machinery gene
  NSQ34_RS10015 (NSQ34_10015) - 1991800..1994514 (+) 2715 WP_065214701.1 PBP1A family penicillin-binding protein -
  NSQ34_RS10020 (NSQ34_10020) - 1994551..1995060 (-) 510 WP_065214700.1 YpoC family protein -
  NSQ34_RS10025 (NSQ34_10025) nth 1995057..1995719 (-) 663 WP_034280464.1 endonuclease III -
  NSQ34_RS10030 (NSQ34_10030) - 1995737..1996441 (-) 705 WP_034280461.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 23347.55 Da        Isoelectric Point: 9.5430

>NTDB_id=983433 NSQ34_RS10010 WP_065214702.1 1991145..1991756(+) (recU) [Bacillus sp. FSL P2-0069]
MIRYPNGKSYQPIQQIGTKKRISGESSYSNRGMTLEADLNETNQYYLVNGIAVIHKKPTPVQIVNVDYPKRSAAVIKEAY
FKQSSTTDYNGVYKGRYIDFEAKETKSTTSFPLKNFHDHQIEHMKQVEKQGGICFVIISAFGSVYYLPASDLFFFWERQK
KNGRKSISKDELMEAGHIMTLGYSPRIDYIKVVETLHFSDESK

Nucleotide


Download         Length: 612 bp        

>NTDB_id=983433 NSQ34_RS10010 WP_065214702.1 1991145..1991756(+) (recU) [Bacillus sp. FSL P2-0069]
ATGATTCGGTATCCAAACGGAAAATCGTATCAGCCCATACAACAAATTGGGACAAAAAAAAGAATCAGCGGCGAATCCTC
TTATAGTAACCGCGGGATGACGCTTGAGGCTGATTTAAATGAAACAAACCAATACTATTTGGTCAACGGGATCGCAGTCA
TTCATAAAAAGCCTACCCCAGTTCAAATTGTGAATGTGGATTATCCAAAAAGAAGTGCTGCTGTCATTAAAGAAGCCTAT
TTTAAACAATCATCCACAACAGACTATAACGGGGTTTACAAAGGCCGCTATATCGATTTTGAAGCAAAGGAAACCAAAAG
CACTACCTCGTTTCCGCTCAAAAATTTCCACGACCATCAAATTGAGCATATGAAACAGGTTGAAAAGCAAGGCGGTATTT
GTTTCGTTATTATATCCGCTTTTGGCTCCGTTTATTATTTGCCCGCTTCAGATCTCTTTTTCTTCTGGGAGCGGCAGAAA
AAAAACGGCCGTAAATCCATTAGTAAAGACGAATTAATGGAAGCTGGCCACATAATGACACTTGGATATTCGCCAAGAAT
TGATTATATTAAAGTAGTGGAGACACTTCATTTTTCGGATGAAAGCAAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

73.267

99.507

0.729

Multiple sequence alignment