Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   NSQ34_RS08600 Genome accession   NZ_CP151984
Coordinates   1708317..1708697 (+) Length   126 a.a.
NCBI ID   WP_051149980.1    Uniprot ID   -
Organism   Bacillus sp. FSL P2-0069     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1703317..1713697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ34_RS08590 (NSQ34_08590) - 1703813..1706956 (+) 3144 WP_176967407.1 cytochrome P450 -
  NSQ34_RS08595 (NSQ34_08595) - 1707150..1708058 (+) 909 WP_024425124.1 trypsin-like serine protease -
  NSQ34_RS08600 (NSQ34_08600) nucA/comI 1708317..1708697 (+) 381 WP_051149980.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  NSQ34_RS08605 (NSQ34_08605) - 1708843..1709691 (+) 849 WP_176967406.1 STAS domain-containing protein -
  NSQ34_RS08610 (NSQ34_08610) - 1709724..1710266 (-) 543 WP_041109224.1 IseA DL-endopeptidase inhibitor family protein -
  NSQ34_RS08615 (NSQ34_08615) - 1710562..1711005 (+) 444 WP_034283419.1 hypothetical protein -
  NSQ34_RS08620 (NSQ34_08620) lexA 1711050..1711670 (-) 621 WP_024425129.1 transcriptional repressor LexA -
  NSQ34_RS08625 (NSQ34_08625) yneA 1711829..1712140 (+) 312 WP_041117521.1 cell division suppressor protein YneA -
  NSQ34_RS08630 (NSQ34_08630) - 1712158..1712805 (+) 648 WP_025093247.1 recombinase family protein -
  NSQ34_RS08635 (NSQ34_08635) - 1712875..1713105 (+) 231 WP_024425132.1 DUF896 domain-containing protein -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13761.43 Da        Isoelectric Point: 8.5068

>NTDB_id=983432 NSQ34_RS08600 WP_051149980.1 1708317..1708697(+) (nucA/comI) [Bacillus sp. FSL P2-0069]
MGTLFGGFGEKQAAKGADRYDHVVQFPKERYPETGSHIQEAIRKGHSDVCTIDRNGADARRQESLKGIPTKPGFDRDEWP
MAVCLEGGKGASVQYVSPSDNRGAGSWVGHQISGFPDGKRILFIVK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=983432 NSQ34_RS08600 WP_051149980.1 1708317..1708697(+) (nucA/comI) [Bacillus sp. FSL P2-0069]
ATGGGCACGTTGTTTGGCGGATTTGGAGAGAAGCAGGCAGCAAAAGGGGCTGATCGATATGATCATGTCGTTCAATTTCC
AAAGGAAAGGTACCCTGAAACAGGCAGTCATATTCAAGAAGCCATTCGAAAAGGGCATTCAGATGTGTGTACCATTGACC
GAAATGGAGCAGATGCCCGCAGGCAAGAATCATTAAAAGGAATTCCGACAAAACCTGGCTTTGACCGGGATGAATGGCCA
ATGGCGGTTTGTCTTGAGGGAGGAAAAGGCGCAAGCGTTCAATATGTCAGTCCATCTGATAATAGGGGGGCAGGCTCATG
GGTCGGGCATCAAATCAGCGGGTTTCCTGATGGGAAAAGAATATTATTCATTGTGAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(29-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

57.983

94.444

0.548

Multiple sequence alignment