Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   NSQ34_RS03370 Genome accession   NZ_CP151984
Coordinates   681877..682251 (+) Length   124 a.a.
NCBI ID   WP_254001598.1    Uniprot ID   -
Organism   Bacillus sp. FSL P2-0069     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 676877..687251
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ34_RS03360 (NSQ34_03360) - 680411..680983 (-) 573 WP_070326801.1 hypothetical protein -
  NSQ34_RS03365 (NSQ34_03365) - 681039..681590 (-) 552 WP_254001597.1 hypothetical protein -
  NSQ34_RS03370 (NSQ34_03370) rapF 681877..682251 (+) 375 WP_254001598.1 hypothetical protein Regulator
  NSQ34_RS03375 (NSQ34_03375) - 682375..683004 (+) 630 WP_240491093.1 tetratricopeptide repeat protein -
  NSQ34_RS03380 (NSQ34_03380) - 683408..684382 (+) 975 WP_017366774.1 tRNA-dihydrouridine synthase -
  NSQ34_RS03385 (NSQ34_03385) - 684492..684941 (+) 450 Protein_623 SMI1/KNR4 family protein -
  NSQ34_RS03390 (NSQ34_03390) - 685076..685840 (-) 765 WP_254001599.1 MurR/RpiR family transcriptional regulator -

Sequence

Protein


Download         Length: 124 a.a.        Molecular weight: 15035.20 Da        Isoelectric Point: 4.9824

>NTDB_id=983408 NSQ34_RS03370 WP_254001598.1 681877..682251(+) (rapF) [Bacillus sp. FSL P2-0069]
MEKIFSSQVGILINDWYRFIRTFSVPDAEILKEQVEREIENMEEDQDLLLYYQLMEFRHRLMLESLVPIEMNQQRPTLPD
LLREIENKQPHVKGTLDYYSNFFRGMHEFHQKNYVAAINFYKAA

Nucleotide


Download         Length: 375 bp        

>NTDB_id=983408 NSQ34_RS03370 WP_254001598.1 681877..682251(+) (rapF) [Bacillus sp. FSL P2-0069]
GTGGAGAAAATTTTTTCTTCTCAAGTTGGTATATTGATAAATGATTGGTATAGATTTATAAGGACATTTAGCGTGCCGGA
TGCAGAGATTTTAAAAGAACAGGTTGAAAGAGAAATAGAGAACATGGAAGAGGATCAAGATTTACTGCTATATTATCAAT
TAATGGAGTTTAGGCATCGACTCATGCTTGAAAGTCTTGTGCCTATTGAAATGAATCAACAACGCCCCACTTTACCCGAT
TTACTCAGAGAAATAGAGAACAAACAGCCCCACGTCAAAGGAACGCTTGACTACTATTCAAACTTCTTTAGAGGTATGCA
CGAATTCCACCAAAAAAATTATGTTGCTGCTATAAATTTTTACAAGGCTGCTTAA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(3-64)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

55.285

99.194

0.548
  rapC Bacillus subtilis subsp. subtilis str. 168

55.372

97.581

0.54

Multiple sequence alignment