Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   NST65_RS09995 Genome accession   NZ_CP151983
Coordinates   1987127..1987762 (+) Length   211 a.a.
NCBI ID   WP_327827710.1    Uniprot ID   -
Organism   Bacillus sp. FSL P4-0248     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1982127..1992762
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST65_RS09955 (NST65_09955) - 1982274..1983392 (+) 1119 WP_231122787.1 NADH-dependent flavin oxidoreductase -
  NST65_RS09960 (NST65_09960) - 1983450..1983956 (-) 507 WP_034280784.1 PTS glucose transporter subunit IIA -
  NST65_RS09965 (NST65_09965) - 1984126..1984545 (+) 420 WP_034280483.1 Hsp20/alpha crystallin family protein -
  NST65_RS09970 (NST65_09970) - 1984566..1985027 (-) 462 WP_034280480.1 YppG family protein -
  NST65_RS09975 (NST65_09975) - 1985135..1985515 (-) 381 WP_224426683.1 YppE family protein -
  NST65_RS09980 (NST65_09980) - 1985565..1985798 (-) 234 WP_223251001.1 DUF5446 family protein -
  NST65_RS09985 (NST65_09985) sspM 1985996..1986100 (+) 105 WP_024422772.1 acid-soluble spore protein SspM -
  NST65_RS09990 (NST65_09990) - 1986124..1987080 (-) 957 WP_061109278.1 DUF2515 domain-containing protein -
  NST65_RS09995 (NST65_09995) recU 1987127..1987762 (+) 636 WP_327827710.1 Holliday junction resolvase RecU Machinery gene
  NST65_RS10000 (NST65_10000) - 1987782..1990496 (+) 2715 WP_065214701.1 PBP1A family penicillin-binding protein -
  NST65_RS10005 (NST65_10005) - 1990533..1991042 (-) 510 WP_065214700.1 YpoC family protein -
  NST65_RS10010 (NST65_10010) nth 1991039..1991701 (-) 663 WP_034280464.1 endonuclease III -
  NST65_RS10015 (NST65_10015) - 1991719..1992423 (-) 705 WP_034280461.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24329.74 Da        Isoelectric Point: 9.8310

>NTDB_id=983371 NST65_RS09995 WP_327827710.1 1987127..1987762(+) (recU) [Bacillus sp. FSL P4-0248]
MIRYPNGKSYQPIQQIGTKKRISGESSYSNRGMTLEADLNETNQYYLVNGIAVIHKKPTPVQIVNVDYPKRSAAVIKEAY
FKQSSTTDYNGVYKGRYIDFEAKETKSTTSFPLKNFHDHQIEHMKQVEKQGGICFVIISAFGSVYYLPASDLFFFWERQK
KNGRKSISKEELMEAGHIMTLGYSPRIDYIKVVETLHFSDESKQQLRSKKV

Nucleotide


Download         Length: 636 bp        

>NTDB_id=983371 NST65_RS09995 WP_327827710.1 1987127..1987762(+) (recU) [Bacillus sp. FSL P4-0248]
ATGATTCGGTATCCAAACGGAAAATCGTATCAGCCCATTCAACAAATTGGGACAAAAAAAAGAATCAGCGGCGAATCCTC
TTATAGTAACCGCGGGATGACGCTTGAGGCTGATTTAAATGAAACGAACCAATACTATTTGGTCAACGGGATCGCAGTCA
TTCATAAAAAGCCTACCCCAGTTCAAATTGTGAATGTGGATTACCCAAAAAGAAGTGCTGCTGTCATTAAAGAAGCCTAT
TTTAAACAATCATCCACAACAGACTATAACGGGGTTTACAAAGGCCGCTATATCGATTTTGAAGCAAAGGAAACCAAAAG
CACTACCTCGTTTCCGCTCAAAAATTTCCACGACCATCAAATTGAGCATATGAAACAGGTTGAAAAGCAAGGCGGCATTT
GTTTCGTTATTATATCCGCTTTTGGCTCCGTTTATTATTTGCCCGCTTCAGATCTCTTTTTCTTCTGGGAGCGGCAGAAA
AAAAACGGCCGTAAATCCATTAGCAAAGAAGAATTAATGGAAGCTGGCCACATAATGACACTTGGATATTCGCCAAGAAT
TGATTATATTAAAGTAGTGGAGACACTTCATTTTTCGGATGAAAGCAAGCAGCAATTACGTTCGAAAAAGGTTTAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

72.772

95.735

0.697

Multiple sequence alignment