Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACN2WE_RS18055 Genome accession   NZ_CP183921
Coordinates   3914043..3915461 (+) Length   472 a.a.
NCBI ID   WP_420034190.1    Uniprot ID   -
Organism   Streptomyces sp. cg28     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3909043..3920461
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN2WE_RS18035 (ACN2WE_18035) - 3909169..3909993 (-) 825 WP_361557118.1 sugar phosphate isomerase/epimerase family protein -
  ACN2WE_RS18040 (ACN2WE_18040) - 3910233..3911168 (-) 936 WP_420034187.1 Ppx/GppA family phosphatase -
  ACN2WE_RS18045 (ACN2WE_18045) - 3911249..3912103 (+) 855 WP_420034188.1 hypothetical protein -
  ACN2WE_RS18050 (ACN2WE_18050) - 3912131..3913855 (-) 1725 WP_420034189.1 BACON domain-containing protein -
  ACN2WE_RS18055 (ACN2WE_18055) radA 3914043..3915461 (+) 1419 WP_420034190.1 DNA repair protein RadA Machinery gene
  ACN2WE_RS18060 (ACN2WE_18060) disA 3915555..3916679 (+) 1125 WP_111662712.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  ACN2WE_RS18065 (ACN2WE_18065) - 3916803..3917621 (-) 819 WP_420034191.1 hypothetical protein -
  ACN2WE_RS18070 (ACN2WE_18070) - 3917810..3918469 (+) 660 WP_420034192.1 phosphatase PAP2 family protein -
  ACN2WE_RS18075 (ACN2WE_18075) - 3918521..3918694 (+) 174 WP_420034193.1 hypothetical protein -
  ACN2WE_RS18080 (ACN2WE_18080) - 3918774..3919688 (+) 915 WP_420034194.1 A/G-specific adenine glycosylase -
  ACN2WE_RS18085 (ACN2WE_18085) - 3919875..3920429 (+) 555 WP_111662715.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 472 a.a.        Molecular weight: 50039.21 Da        Isoelectric Point: 8.0093

>NTDB_id=983361 ACN2WE_RS18055 WP_420034190.1 3914043..3915461(+) (radA) [Streptomyces sp. cg28]
MATRTKSANSGKQRPSYRCTECGWQTVKWLGRCGECQAWGTIEEYGAPAVRTTAPGRVTTSALPIGEVDGRQATARTTGV
PELDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKSASEKHKTLYVTGEESASQVRLRADRIHAIDDHLYLAAETDLS
AVLGHLDAVQPSLLVLDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKEGTIAGPRLLEHLVDVV
LNFEGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLEGRRPLVAEVQALTVD
SQIPSPRRTTSGLETSRVSMMLAVLEQRGKISALGKRDIYSATVGGVKLTEPAADLAIALALASAASDTPLPKNLVAIGE
VGLAGEVRRVTGVQRRLAEAHRLGFTHALVPGDPGKVPPGMKVLEVADIGDALRVLPKSRRREAPRETEDRR

Nucleotide


Download         Length: 1419 bp        

>NTDB_id=983361 ACN2WE_RS18055 WP_420034190.1 3914043..3915461(+) (radA) [Streptomyces sp. cg28]
ATGGCCACGCGTACCAAATCCGCGAACAGCGGCAAGCAACGACCGTCGTACCGCTGCACCGAATGCGGCTGGCAGACGGT
CAAGTGGCTGGGCCGCTGCGGCGAGTGCCAGGCCTGGGGGACGATCGAGGAGTACGGCGCCCCGGCGGTGCGCACGACCG
CGCCCGGCCGCGTCACGACCTCCGCGCTGCCCATCGGCGAGGTGGACGGCCGGCAGGCCACGGCCCGCACCACCGGTGTG
CCCGAGCTGGACCGGGTGCTCGGCGGCGGTCTGGTGCCCGGCGCGGTGGTGCTGCTCGCGGGCGAGCCCGGCGTCGGCAA
GTCCACGCTGCTGCTCGACGTCGCCGCGAAGTCGGCCAGCGAGAAGCACAAGACGCTCTACGTGACGGGCGAGGAGTCGG
CGTCCCAGGTGCGGCTGCGCGCGGACCGCATCCACGCGATCGACGACCATCTGTACCTGGCGGCCGAGACGGACCTGTCC
GCCGTCCTCGGCCATCTGGACGCGGTGCAGCCGTCGCTGCTGGTCCTGGACTCCGTACAGACGGTGGCCTCGCCGGAGAT
CGACGGCGCGCCGGGCGGCATGGCGCAGGTCCGCGAGGTGGCCGGGGCGCTGATCCGTGCCTCCAAGGAGCGCGGCATGT
CCACGCTCCTGGTGGGCCATGTCACCAAGGAGGGCACCATCGCGGGCCCGCGCCTCCTGGAGCACCTGGTCGACGTGGTG
CTGAACTTCGAGGGCGACCGGCACGCGCGCCTGCGCCTGGTCCGCGGTGTGAAGAACCGGTACGGGACGACGGACGAGGT
CGGCTGCTTCGAGCTGCACGACGAGGGCATCACGGGCCTGGCCGACCCGAGCGGCCTGTTCCTGACCCGGCGCGACGAGC
CGGTGCCGGGCACCTGCCTCACGGTCACCCTGGAGGGCCGCCGCCCGCTGGTCGCCGAGGTGCAGGCGCTCACCGTCGAC
TCGCAGATCCCCTCGCCCCGGCGCACCACATCGGGCCTGGAGACCTCCCGCGTCTCGATGATGCTGGCGGTGCTCGAACA
GCGGGGCAAGATCAGCGCCTTGGGCAAAAGGGACATCTATTCCGCGACGGTCGGCGGCGTGAAGCTCACCGAGCCCGCCG
CGGACCTCGCGATCGCGCTGGCACTGGCCTCCGCGGCGAGCGACACCCCGCTGCCCAAGAATCTCGTGGCGATCGGAGAA
GTGGGCCTGGCGGGCGAGGTCAGAAGGGTCACGGGCGTGCAGCGCCGGCTCGCCGAGGCGCACCGGCTGGGCTTCACCCA
TGCCCTCGTACCGGGCGATCCGGGCAAGGTCCCGCCCGGTATGAAGGTCCTGGAAGTCGCCGATATAGGGGACGCGCTGC
GGGTGCTGCCGAAGAGCCGTCGGCGAGAGGCCCCACGGGAGACGGAGGACCGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(81-225)

Subunit ChlI of Mg-chelatase (ChlI)

(373-431)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(17-44)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

43.875

95.127

0.417
  radA Streptococcus mitis SK321

43.875

95.127

0.417
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.142

95.763

0.413
  radA Streptococcus pneumoniae TIGR4

43.43

95.127

0.413
  radA Streptococcus pneumoniae D39

43.43

95.127

0.413
  radA Streptococcus pneumoniae Rx1

43.43

95.127

0.413
  radA Streptococcus pneumoniae R6

43.43

95.127

0.413