Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   NSQ25_RS06905 Genome accession   NZ_CP151982
Coordinates   1355032..1355310 (+) Length   92 a.a.
NCBI ID   WP_024424746.1    Uniprot ID   A0AAP7QQG0
Organism   Bacillus sp. FSL R5-0512     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1350032..1360310
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ25_RS06880 (NSQ25_06880) - 1350128..1350403 (-) 276 WP_070325775.1 hypothetical protein -
  NSQ25_RS06885 (NSQ25_06885) - 1350547..1352166 (+) 1620 WP_024426884.1 ATP-binding cassette domain-containing protein -
  NSQ25_RS06890 (NSQ25_06890) - 1352202..1353434 (-) 1233 WP_326136482.1 aminopeptidase -
  NSQ25_RS06895 (NSQ25_06895) - 1353542..1353673 (-) 132 WP_326136480.1 protein YkpC -
  NSQ25_RS06900 (NSQ25_06900) mreBH 1353748..1354755 (-) 1008 WP_024424745.1 rod-share determining protein MreBH -
  NSQ25_RS06905 (NSQ25_06905) abrB 1355032..1355310 (+) 279 WP_024424746.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  NSQ25_RS06910 (NSQ25_06910) - 1355456..1356766 (+) 1311 WP_101677238.1 ATP-binding protein -
  NSQ25_RS06915 (NSQ25_06915) - 1356771..1357607 (+) 837 WP_070325777.1 gamma-glutamylcyclotransferase family protein -
  NSQ25_RS06920 (NSQ25_06920) - 1357645..1358313 (+) 669 WP_008345123.1 TrkA family potassium uptake protein -
  NSQ25_RS06925 (NSQ25_06925) ade 1358576..1360306 (+) 1731 WP_326136479.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10306.01 Da        Isoelectric Point: 4.6909

>NTDB_id=983304 NSQ25_RS06905 WP_024424746.1 1355032..1355310(+) (abrB) [Bacillus sp. FSL R5-0512]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSMEFFIDGDKIVLKKYQPEGVCLMTGEITSENHEYGNGQITLSAEGAE
LLLKELQEALQK

Nucleotide


Download         Length: 279 bp        

>NTDB_id=983304 NSQ25_RS06905 WP_024424746.1 1355032..1355310(+) (abrB) [Bacillus sp. FSL R5-0512]
TTGAAATCTATCGGAGTCGTAAGAAAAGTAGACGAACTAGGGCGTATTGTGATGCCAATCGAATTGAGAAGAGCACTTGA
TATCGCTATTAAAGACAGTATGGAATTTTTTATAGATGGAGATAAAATCGTCTTGAAAAAATATCAGCCAGAGGGCGTTT
GTCTCATGACTGGTGAGATTACATCAGAGAACCATGAATATGGAAATGGTCAAATTACATTAAGCGCTGAAGGCGCAGAA
CTGCTGTTAAAAGAACTGCAAGAAGCTCTTCAGAAGTAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.945

98.913

0.543

Multiple sequence alignment