Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   R8507_RS02405 Genome accession   NZ_AP026925
Coordinates   465103..465834 (+) Length   243 a.a.
NCBI ID   WP_000889923.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900700097     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 460103..470834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8507_RS02380 (PC0094_04680) - 461815..462183 (+) 369 WP_044791649.1 hypothetical protein -
  R8507_RS02385 (PC0094_04690) dnaJ 462456..463592 (+) 1137 WP_001066301.1 molecular chaperone DnaJ -
  R8507_RS02390 (PC0094_04700) - 463927..464166 (-) 240 WP_001813906.1 hypothetical protein -
  R8507_RS02395 (PC0094_04710) - 464328..464615 (-) 288 WP_000777760.1 hypothetical protein -
  R8507_RS02400 (PC0094_04720) - 464625..465035 (-) 411 WP_001278301.1 HIT family protein -
  R8507_RS02405 (PC0094_04730) pptA 465103..465834 (+) 732 WP_000889923.1 ABC transporter ATP-binding protein Regulator
  R8507_RS02410 (PC0094_04740) - 465831..466880 (+) 1050 WP_000653752.1 ABC transporter permease -
  R8507_RS02415 (PC0094_04750) - 467048..467377 (-) 330 WP_000132575.1 hypothetical protein -
  R8507_RS02420 (PC0094_04760) - 467653..467991 (+) 339 WP_000682122.1 LytTR family DNA-binding domain-containing protein -
  R8507_RS02425 (PC0094_04770) comE/blpR 467996..468733 (+) 738 WP_001219126.1 response regulator transcription factor Regulator
  R8507_RS02430 (PC0094_04780) - 468746..470086 (+) 1341 WP_317643596.1 sensor histidine kinase -
  R8507_RS02435 (PC0094_04790) blpC 470157..470285 (-) 129 WP_000358815.1 quorum-sensing system pheromone BlpC -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27026.52 Da        Isoelectric Point: 4.7792

>NTDB_id=98330 R8507_RS02405 WP_000889923.1 465103..465834(+) (pptA) [Streptococcus pneumoniae strain PZ900700097]
MLEIKNLTGGYVHVPVLKDVSFTVESGQLVGLIGLNGAGKSTTINEIIGLLAPYSGSININGLTLQGDATSYRKQIGYIP
ETPSLYEELTLREHIETVAMAYGIEQKVAFERVEPLLKMFRLEQKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPF
LGLDPLAISDLIQLLEVEKQKGKSILMSTHVLDSAEKMCDAFVILHKGEVRAKGNLLQLREAFDMPEASLNDIYLALTKE
EDL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=98330 R8507_RS02405 WP_000889923.1 465103..465834(+) (pptA) [Streptococcus pneumoniae strain PZ900700097]
ATGTTAGAAATTAAAAACCTGACAGGTGGCTATGTTCATGTTCCTGTTTTGAAAGATGTGTCCTTTACTGTTGAAAGTGG
GCAGTTGGTCGGTTTGATTGGTCTCAATGGTGCTGGGAAATCAACGACGATCAATGAGATTATCGGTCTGTTGGCACCTT
ATAGTGGCTCCATCAATATCAATGGCCTGACTCTGCAAGGAGATGCGACTAGCTACCGCAAGCAGATTGGCTACATTCCT
GAGACGCCTAGTCTGTATGAGGAATTGACCCTCAGAGAGCATATCGAAACGGTTGCTATGGCTTACGGTATTGAGCAAAA
AGTGGCTTTCGAACGAGTAGAGCCCTTGTTAAAAATGTTCCGTTTGGAACAGAAATTAGACTGGTTCCCTGTTCATTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCTTTTGTGGTGGATCCAAGTCTTTTCATCGTGGATGAGCCTTTC
CTTGGTCTTGATCCGCTGGCTATTTCTGATTTGATTCAGCTTTTGGAAGTGGAGAAGCAAAAGGGCAAGTCTATTCTCAT
GAGTACCCACGTGCTGGATTCGGCGGAAAAGATGTGTGATGCCTTTGTCATTCTTCACAAGGGAGAGGTGCGTGCCAAAG
GCAATCTCCTGCAACTACGTGAAGCCTTTGATATGCCTGAGGCTAGTTTGAATGATATTTACTTGGCTCTGACCAAAGAG
GAGGATCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

72.199

99.177

0.716
  pptA Streptococcus thermophilus LMD-9

71.369

99.177

0.708

Multiple sequence alignment