Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   NSQ25_RS01920 Genome accession   NZ_CP151982
Coordinates   359364..359792 (-) Length   142 a.a.
NCBI ID   WP_326136074.1    Uniprot ID   -
Organism   Bacillus sp. FSL R5-0512     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 354364..364792
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ25_RS01890 (NSQ25_01890) - 354526..354855 (+) 330 WP_024424311.1 YckD family protein -
  NSQ25_RS01895 (NSQ25_01895) - 354899..355663 (-) 765 WP_326136075.1 MBL fold metallo-hydrolase -
  NSQ25_RS01900 (NSQ25_01900) - 355779..356195 (+) 417 WP_180951418.1 Lrp/AsnC family transcriptional regulator -
  NSQ25_RS01905 (NSQ25_01905) - 356224..357030 (+) 807 WP_034283301.1 AAC(3) family N-acetyltransferase -
  NSQ25_RS01910 (NSQ25_01910) - 357032..357418 (-) 387 WP_034283302.1 competence protein ComJ -
  NSQ25_RS01915 (NSQ25_01915) - 357539..359236 (-) 1698 WP_046313811.1 methyl-accepting chemotaxis protein -
  NSQ25_RS01920 (NSQ25_01920) nucA/comI 359364..359792 (-) 429 WP_326136074.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  NSQ25_RS01925 (NSQ25_01925) - 360160..362229 (+) 2070 WP_326136073.1 hydantoinase/oxoprolinase family protein -
  NSQ25_RS01930 (NSQ25_01930) - 362219..364207 (+) 1989 WP_326136072.1 hydantoinase B/oxoprolinase family protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 16001.99 Da        Isoelectric Point: 6.2215

>NTDB_id=983284 NSQ25_RS01920 WP_326136074.1 359364..359792(-) (nucA/comI) [Bacillus sp. FSL R5-0512]
MKLLKMILLLLLIVIGVTTGYIQLEQGKQETANSSYDKTIHFPSDRYPETAKHIEEAIDEGHSSICTIDRKHSDEQRDRS
LHGVPTKRGYDRDEWPMAMCKEGGTGASVKYVRPSDNRGAGSWVSHQLSDDPDGTRIQFIID

Nucleotide


Download         Length: 429 bp        

>NTDB_id=983284 NSQ25_RS01920 WP_326136074.1 359364..359792(-) (nucA/comI) [Bacillus sp. FSL R5-0512]
ATGAAACTTCTTAAAATGATTCTCTTGCTTTTATTGATTGTTATTGGTGTAACAACAGGCTATATCCAGCTGGAGCAAGG
GAAACAAGAGACAGCGAATTCATCTTATGACAAAACGATTCATTTTCCATCAGACCGCTATCCCGAAACAGCCAAGCACA
TAGAAGAAGCCATTGATGAAGGTCATTCGTCCATTTGTACAATTGACCGTAAACATAGTGATGAGCAGAGGGATCGATCA
TTACATGGCGTTCCAACAAAGCGCGGGTATGATCGTGACGAATGGCCAATGGCGATGTGCAAAGAAGGAGGCACAGGAGC
TTCTGTCAAATATGTACGCCCTTCTGATAATAGAGGCGCAGGCTCGTGGGTAAGTCATCAATTATCGGATGATCCAGACG
GCACAAGAATCCAATTTATCATCGATTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(46-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

69.811

74.648

0.521

Multiple sequence alignment