Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   V3C22_RS06665 Genome accession   NZ_CP183775
Coordinates   1376864..1379068 (-) Length   734 a.a.
NCBI ID   WP_002278294.1    Uniprot ID   -
Organism   Streptococcus mutans strain Xc     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1371864..1384068
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V3C22_RS06635 (V3C22_06635) - 1372017..1372712 (-) 696 WP_002266211.1 DnaD domain-containing protein -
  V3C22_RS06640 (V3C22_06640) metA 1372722..1373666 (-) 945 WP_002265202.1 homoserine O-acetyltransferase MetA -
  V3C22_RS06645 (V3C22_06645) - 1373770..1374288 (-) 519 WP_002263078.1 adenine phosphoribosyltransferase -
  V3C22_RS06650 (V3C22_06650) - 1374420..1374788 (-) 369 Protein_1280 ClbS/DfsB family four-helix bundle protein -
  V3C22_RS06655 (V3C22_06655) - 1374961..1375593 (-) 633 WP_226706794.1 GyrI-like domain-containing protein -
  V3C22_RS06660 (V3C22_06660) - 1375845..1376744 (-) 900 WP_226706793.1 WYL domain-containing protein -
  V3C22_RS06665 (V3C22_06665) recJ 1376864..1379068 (-) 2205 WP_002278294.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  V3C22_RS06670 (V3C22_06670) - 1379065..1379829 (-) 765 WP_002263858.1 SDR family NAD(P)-dependent oxidoreductase -
  V3C22_RS06675 (V3C22_06675) rnz 1379826..1380755 (-) 930 WP_002267176.1 ribonuclease Z -
  V3C22_RS06680 (V3C22_06680) - 1380783..1381418 (-) 636 WP_002270420.1 hypothetical protein -
  V3C22_RS06685 (V3C22_06685) hflX 1381405..1382652 (-) 1248 WP_226706791.1 GTPase HflX -
  V3C22_RS06690 (V3C22_06690) miaA 1382841..1383725 (-) 885 WP_019314108.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA -
  V3C22_RS06695 (V3C22_06695) - 1383800..1383976 (+) 177 WP_002263068.1 DUF3042 family protein -

Sequence

Protein


Download         Length: 734 a.a.        Molecular weight: 82412.18 Da        Isoelectric Point: 4.4751

>NTDB_id=983277 V3C22_RS06665 WP_002278294.1 1376864..1379068(-) (recJ) [Streptococcus mutans strain Xc]
MITSKYAWKINEKKPDDGFFELAKKENLNPTAAQILYERGFKTSEDIEAFLRPDLSQLHDPFLLNDMDKAVTRIRRAIET
NERILIYGDYDADGMTSSSIAKEALEMLGAEVEAYLPNRFTDGYGPNLSVYKYFIEQQDISLILTVDNGIAGHDAIAYAQ
GQGVDVIVTDHHSMPAELPSAYAVVHPEHPDANYPFKCLAGCGVAFKLACALLESIPTEMLDLVAIGTIADMVSLTDENR
VMVKYGLEILKQTERVGLQELIALAGVDFADINEETIGFKLAPQLNALGRLDDPNPAVELLTGFDDEEAKTIAAMINEKN
EERKTIVQAIFEEAMTLVDENKSVQVLAKEGWHAGVLGIVAGRIMEQINQPVIVLNIENGLAKGSARSLESVNIFNALDA
HRDLFMAFGGHAGAAGMTLEADKLEELSQVLNDYIQEHAIDLSQKSALVIDEELYLPELSLDTLKGLETLAPFGMDNKKP
IFLLRDFTVKQVRTMGQNGAHLKLKVAQEQAVFDLLAFNYGSLVTEFQQAQHLELAVTLSVNRWNGNTSLQLMLVDARVE
GIQLLDIRARNSALPDGVPFLEDQTDSKAVVLFEIPEKEEDLLALFENRDFEVIYFKNRIKHQYYLTGSGTREQFAKLYK
TIYQFPEFDVRHKLKELSQFLKIPDILLVKMIQIFDELDFVSIDDGIMTVNKDAQKREISDSHIYQDLKKLVKFQELMAL
GTPQEIYEFLKRDR

Nucleotide


Download         Length: 2205 bp        

>NTDB_id=983277 V3C22_RS06665 WP_002278294.1 1376864..1379068(-) (recJ) [Streptococcus mutans strain Xc]
ATGATTACTTCCAAATATGCTTGGAAAATAAATGAAAAAAAGCCAGATGATGGCTTTTTTGAGCTGGCTAAAAAAGAAAA
TCTCAATCCTACAGCTGCACAAATTTTATATGAGCGAGGTTTTAAAACAAGTGAAGATATAGAAGCGTTTTTGAGACCTG
ATTTGTCTCAATTACATGATCCTTTTCTTTTAAATGATATGGACAAGGCTGTCACGCGTATTCGCAGAGCTATTGAAACC
AATGAACGAATTCTTATCTATGGGGATTACGATGCTGATGGTATGACGTCAAGTTCCATTGCAAAGGAAGCTTTGGAAAT
GCTGGGAGCTGAGGTAGAGGCTTATCTTCCTAATCGTTTTACCGATGGTTATGGTCCCAATCTCAGTGTTTATAAATATT
TTATTGAGCAGCAGGATATATCACTGATTCTTACTGTGGATAATGGTATTGCTGGCCATGATGCTATTGCTTATGCGCAA
GGACAAGGTGTTGATGTCATTGTTACTGACCACCACAGTATGCCTGCTGAGCTTCCTTCAGCTTATGCTGTTGTTCATCC
TGAACATCCGGATGCTAATTATCCTTTTAAATGTTTAGCAGGGTGCGGTGTCGCTTTTAAGCTAGCCTGTGCCTTGTTAG
AATCCATTCCGACAGAAATGCTGGATTTGGTGGCTATTGGAACCATTGCCGATATGGTATCGCTCACCGATGAAAATCGT
GTAATGGTCAAATACGGTCTTGAAATCCTAAAACAAACAGAACGCGTCGGTCTGCAAGAATTAATAGCACTTGCAGGTGT
TGATTTTGCTGATATCAATGAAGAAACCATTGGTTTCAAGTTAGCACCCCAGCTTAATGCTTTGGGACGTCTGGATGATC
CCAATCCTGCTGTTGAATTGTTGACAGGCTTTGATGATGAAGAAGCAAAGACTATTGCGGCCATGATTAATGAAAAAAAT
GAGGAGCGAAAGACCATTGTACAGGCTATTTTTGAAGAAGCTATGACTCTGGTTGATGAGAACAAATCTGTTCAGGTCTT
GGCTAAAGAAGGCTGGCATGCTGGTGTTCTGGGGATTGTTGCAGGTCGTATTATGGAACAAATAAACCAGCCAGTCATTG
TTCTTAATATTGAAAATGGCCTTGCCAAGGGAAGTGCCCGTAGTTTAGAGTCAGTCAATATTTTTAATGCCCTTGATGCG
CATAGGGATTTATTTATGGCTTTTGGAGGCCATGCTGGAGCTGCGGGTATGACTCTAGAGGCTGATAAATTAGAAGAATT
ATCACAGGTTTTAAATGATTATATTCAAGAACATGCGATTGATTTATCGCAAAAGTCTGCTTTAGTAATTGATGAAGAAT
TGTACTTGCCAGAACTTAGTTTAGATACTTTAAAAGGGCTTGAAACTTTGGCTCCTTTTGGTATGGACAATAAAAAACCT
ATTTTTTTACTAAGGGATTTTACAGTCAAACAGGTTAGAACGATGGGACAAAATGGAGCTCATTTGAAGTTAAAAGTGGC
TCAGGAACAGGCTGTTTTTGATCTCCTTGCCTTTAACTACGGTTCGCTCGTGACAGAATTTCAACAAGCTCAGCATCTCG
AACTAGCTGTTACTTTATCGGTTAATCGTTGGAACGGCAATACTAGTCTACAATTGATGCTAGTTGATGCGCGTGTTGAA
GGCATTCAGTTGCTTGATATCCGTGCTCGCAATAGCGCTCTGCCTGACGGAGTTCCCTTTTTAGAAGATCAAACAGATAG
TAAGGCAGTTGTCTTATTTGAAATACCGGAAAAAGAAGAAGACCTTCTAGCACTTTTTGAAAATCGGGATTTTGAAGTCA
TTTATTTTAAAAATAGGATTAAGCATCAATATTATTTAACAGGATCTGGAACACGTGAGCAATTTGCTAAGCTTTACAAG
ACGATTTACCAGTTTCCGGAATTTGATGTACGTCATAAGTTAAAAGAGCTCAGTCAATTTCTCAAAATTCCAGATATTTT
GCTGGTCAAGATGATCCAAATTTTTGATGAATTGGACTTTGTTTCCATTGATGATGGCATTATGACAGTTAATAAAGATG
CTCAAAAACGGGAAATTTCTGACAGTCATATTTATCAAGACTTGAAAAAATTAGTGAAATTCCAAGAGTTAATGGCATTA
GGAACACCTCAGGAAATATATGAATTTTTAAAACGCGATCGCTAA

Domains

Predicted by InterProScan.

DHHA1 domain (DHHA1)

(317-435)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(584-729)

DHH family (DHH)

(83-228)

RecJ OB domain (RecJ_OB)

(450-556)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

65.082

100

0.653
  recJ Bacillus subtilis subsp. subtilis str. 168

37.597

100

0.396