Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   V3C22_RS04740 Genome accession   NZ_CP183775
Coordinates   987439..988401 (+) Length   320 a.a.
NCBI ID   WP_128853113.1    Uniprot ID   -
Organism   Streptococcus mutans strain Xc     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 982439..993401
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V3C22_RS04715 (V3C22_04715) dapA 982671..983552 (+) 882 WP_002262854.1 4-hydroxy-tetrahydrodipicolinate synthase -
  V3C22_RS04720 (V3C22_04720) - 983860..984198 (+) 339 WP_002262855.1 ATP cone domain-containing protein -
  V3C22_RS04725 (V3C22_04725) - 984484..985449 (+) 966 WP_002262856.1 hypothetical protein -
  V3C22_RS04730 (V3C22_04730) ylqF 985646..986497 (+) 852 WP_002284251.1 ribosome biogenesis GTPase YlqF -
  V3C22_RS04735 (V3C22_04735) - 986484..987266 (+) 783 WP_002284250.1 ribonuclease HII -
  V3C22_RS04740 (V3C22_04740) ceuB 987439..988401 (+) 963 WP_128853113.1 ABC transporter permease Machinery gene
  V3C22_RS04745 (V3C22_04745) - 988398..989369 (+) 972 WP_002270388.1 iron chelate uptake ABC transporter family permease subunit -
  V3C22_RS04750 (V3C22_04750) - 989366..990172 (+) 807 WP_002264287.1 ABC transporter ATP-binding protein -
  V3C22_RS04755 (V3C22_04755) - 990220..991236 (+) 1017 WP_002267969.1 siderophore ABC transporter substrate-binding protein -
  V3C22_RS04760 (V3C22_04760) - 991308..991589 (+) 282 WP_002262863.1 hypothetical protein -
  V3C22_RS04765 (V3C22_04765) dprA 991756..992598 (+) 843 WP_002262865.1 DNA-processing protein DprA Machinery gene

Sequence

Protein


Download         Length: 320 a.a.        Molecular weight: 34978.25 Da        Isoelectric Point: 10.0073

>NTDB_id=983260 V3C22_RS04740 WP_128853113.1 987439..988401(+) (ceuB) [Streptococcus mutans strain Xc]
MKKVLTVPVLGAAAVFLSLVSIFIGVKSLSLFELGSLDNSQLNILLSSRIPRTVSILIAGSSLAVCGLIMQQLTQNKFVS
PTTAGTMDWAKLGVVVTIILFSKSSLLLQLIISSVFVIFGSLFFIYLLKVIKFKDDVFIPLVGLMLGKVVSAISTFLGVQ
FQILQSVNSWLEGHFSIMTSHRYEILFLVLPCMVLIYLYAHQFTIAGLGEDFSKNLGLNYQFIINLGLVIVSVMTAIIVT
VVGSLPFLGLIVPNSISAIKGDNMKNNLILTSFLGAVIVLICDIFGRLVIFPYEVSIGLTMGIIGSIFFLYFLMKGRRRS

Nucleotide


Download         Length: 963 bp        

>NTDB_id=983260 V3C22_RS04740 WP_128853113.1 987439..988401(+) (ceuB) [Streptococcus mutans strain Xc]
ATGAAAAAAGTACTCACTGTTCCAGTGCTGGGTGCAGCTGCAGTCTTTCTTTCTCTCGTTTCAATATTTATCGGTGTTAA
GAGTCTATCGCTTTTTGAACTGGGCTCTTTAGACAATTCACAACTTAACATTTTATTATCTAGTCGCATTCCTAGAACGG
TTAGTATTTTAATTGCTGGCTCTAGTTTAGCCGTTTGTGGTTTAATTATGCAGCAATTAACGCAAAATAAATTTGTCTCA
CCGACAACGGCTGGGACAATGGATTGGGCAAAGCTAGGTGTTGTTGTCACTATTATCTTATTTAGTAAATCTTCTTTACT
ATTGCAGTTGATTATTTCATCGGTCTTTGTCATTTTTGGTTCTTTGTTTTTTATCTATCTTTTAAAGGTTATTAAATTTA
AGGATGATGTTTTCATTCCTCTAGTAGGTCTGATGTTGGGGAAAGTTGTATCTGCAATCAGTACTTTTTTAGGAGTACAG
TTTCAGATATTGCAGTCTGTCAACAGTTGGTTAGAAGGTCATTTTTCCATCATGACTTCTCATCGATATGAGATTTTATT
TTTGGTGCTGCCTTGCATGGTATTAATTTACCTTTATGCTCATCAGTTTACTATAGCTGGCTTGGGAGAAGATTTTTCTA
AAAATCTAGGTTTGAATTATCAATTTATTATTAATTTAGGCTTGGTTATTGTTTCGGTTATGACAGCTATCATTGTAACA
GTTGTTGGCAGTCTTCCTTTTTTAGGTTTGATTGTTCCTAATTCGATTTCTGCTATCAAGGGCGATAATATGAAGAACAA
CTTAATATTAACCTCTTTTTTAGGTGCTGTTATTGTGCTTATTTGTGATATTTTTGGACGTCTTGTTATTTTTCCTTATG
AAGTTTCTATTGGATTGACTATGGGAATAATAGGAAGTATCTTTTTTCTTTATTTTTTGATGAAGGGAAGAAGGCGTTCA
TGA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(15-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

46.395

99.688

0.463