Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   NSU11_RS11715 Genome accession   NZ_CP151981
Coordinates   2313171..2313941 (-) Length   256 a.a.
NCBI ID   WP_342493586.1    Uniprot ID   -
Organism   Bacillus sp. FSL R5-0712     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2308171..2318941
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSU11_RS11695 (NSU11_11695) - 2308263..2309084 (-) 822 WP_008342399.1 pyruvate, water dikinase regulatory protein -
  NSU11_RS11700 (NSU11_11700) - 2309110..2309748 (-) 639 WP_024423017.1 helix-turn-helix transcriptional regulator -
  NSU11_RS11705 (NSU11_11705) glyS 2309916..2311961 (-) 2046 WP_342493585.1 glycine--tRNA ligase subunit beta -
  NSU11_RS11710 (NSU11_11710) glyQ 2311954..2312841 (-) 888 WP_012010611.1 glycine--tRNA ligase subunit alpha -
  NSU11_RS11715 (NSU11_11715) recO 2313171..2313941 (-) 771 WP_342493586.1 DNA repair protein RecO Machinery gene
  NSU11_RS11720 (NSU11_11720) - 2313977..2314120 (-) 144 WP_003217288.1 YqzL family protein -
  NSU11_RS11725 (NSU11_11725) era 2314269..2315174 (-) 906 WP_007501305.1 GTPase Era -
  NSU11_RS11730 (NSU11_11730) - 2315167..2315565 (-) 399 WP_008356263.1 cytidine deaminase -
  NSU11_RS11735 (NSU11_11735) - 2315679..2316065 (-) 387 WP_048238914.1 diacylglycerol kinase family protein -
  NSU11_RS11740 (NSU11_11740) ybeY 2316043..2316522 (-) 480 WP_048238915.1 rRNA maturation RNase YbeY -
  NSU11_RS11745 (NSU11_11745) - 2316523..2318610 (-) 2088 WP_342493906.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29323.94 Da        Isoelectric Point: 8.1204

>NTDB_id=983255 NSU11_RS11715 WP_342493586.1 2313171..2313941(-) (recO) [Bacillus sp. FSL R5-0712]
MLIKSEGIVLRTTDYGETNKIVTLLTREHGKIGVMARGAKKSNSRLSAISQPFLYGTFLIQSSTGLGTLQQGEMIESMRT
IREDLFLTAYAAYMTELLDKGTEEKKPNPYLFELLLQSLRHLNEGTDADIILFIVEVKMLSVMGMKPELDQCVHCGQKEG
QFHFSIRDNGFICQNCFSKDPYKLPLSTAAARLLRLFHYFDLSRLGQVDVKQQTKQEIRQVLDHYYDEYSGLYLKSKKFM
NQMESMKKLMGDENKS

Nucleotide


Download         Length: 771 bp        

>NTDB_id=983255 NSU11_RS11715 WP_342493586.1 2313171..2313941(-) (recO) [Bacillus sp. FSL R5-0712]
ATGCTCATTAAAAGTGAAGGAATCGTCCTTAGAACAACAGATTATGGCGAAACAAACAAAATTGTCACGCTGCTCACTAG
AGAACATGGAAAAATTGGCGTGATGGCAAGAGGCGCTAAAAAATCAAACAGCCGCCTGTCAGCTATAAGCCAGCCGTTTT
TATACGGCACCTTTCTCATCCAATCATCAACAGGACTTGGAACGCTCCAGCAAGGCGAAATGATTGAAAGTATGCGGACC
ATTCGGGAAGACTTATTTCTGACCGCATATGCCGCATATATGACGGAATTACTTGATAAAGGGACAGAAGAAAAAAAGCC
AAACCCTTATTTGTTTGAGCTTCTGCTTCAATCTCTGCGTCATCTCAATGAAGGCACAGATGCTGATATTATTTTATTTA
TCGTAGAGGTCAAAATGTTATCAGTGATGGGAATGAAGCCTGAACTGGATCAATGTGTCCACTGTGGTCAAAAAGAAGGG
CAGTTCCATTTCTCGATAAGAGATAACGGATTCATTTGCCAAAATTGTTTTTCGAAAGATCCATATAAACTGCCCTTATC
CACCGCAGCTGCAAGGCTGCTCCGTTTGTTTCATTATTTTGATTTATCAAGGCTTGGTCAGGTTGATGTGAAACAGCAGA
CGAAACAAGAAATTCGTCAAGTGCTTGATCACTACTATGACGAATATTCCGGCCTCTATTTAAAATCAAAAAAATTCATG
AATCAGATGGAATCCATGAAAAAGCTAATGGGTGACGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

75

100

0.75

Multiple sequence alignment