Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   NSU11_RS08735 Genome accession   NZ_CP151981
Coordinates   1757014..1757394 (+) Length   126 a.a.
NCBI ID   WP_051149980.1    Uniprot ID   -
Organism   Bacillus sp. FSL R5-0712     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1752014..1762394
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSU11_RS08725 (NSU11_08725) - 1752510..1755653 (+) 3144 WP_342493880.1 bifunctional cytochrome P450/NADPH--P450 reductase -
  NSU11_RS08730 (NSU11_08730) - 1755847..1756755 (+) 909 WP_024425124.1 trypsin-like serine protease -
  NSU11_RS08735 (NSU11_08735) nucA/comI 1757014..1757394 (+) 381 WP_051149980.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  NSU11_RS08740 (NSU11_08740) - 1757540..1758388 (+) 849 WP_024425126.1 STAS domain-containing protein -
  NSU11_RS08745 (NSU11_08745) - 1758421..1758963 (-) 543 WP_024425127.1 IseA DL-endopeptidase inhibitor family protein -
  NSU11_RS08750 (NSU11_08750) - 1759259..1759705 (+) 447 WP_024425128.1 hypothetical protein -
  NSU11_RS08755 (NSU11_08755) lexA 1759750..1760370 (-) 621 WP_024425129.1 transcriptional repressor LexA -
  NSU11_RS08760 (NSU11_08760) yneA 1760529..1760840 (+) 312 WP_024425130.1 cell division suppressor protein YneA -
  NSU11_RS08765 (NSU11_08765) - 1760858..1761505 (+) 648 WP_024425131.1 recombinase family protein -
  NSU11_RS08770 (NSU11_08770) - 1761575..1761805 (+) 231 WP_024425132.1 DUF896 domain-containing protein -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13761.43 Da        Isoelectric Point: 8.5068

>NTDB_id=983248 NSU11_RS08735 WP_051149980.1 1757014..1757394(+) (nucA/comI) [Bacillus sp. FSL R5-0712]
MGTLFGGFGEKQAAKGADRYDHVVQFPKERYPETGSHIQEAIRKGHSDVCTIDRNGADARRQESLKGIPTKPGFDRDEWP
MAVCLEGGKGASVQYVSPSDNRGAGSWVGHQISGFPDGKRILFIVK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=983248 NSU11_RS08735 WP_051149980.1 1757014..1757394(+) (nucA/comI) [Bacillus sp. FSL R5-0712]
ATGGGCACGTTGTTTGGCGGATTTGGAGAGAAGCAGGCAGCAAAAGGGGCTGATCGATATGATCATGTCGTTCAATTTCC
AAAGGAAAGGTACCCTGAAACAGGCAGTCATATTCAAGAAGCCATTCGAAAAGGGCATTCAGATGTGTGTACCATTGACC
GAAATGGAGCAGATGCCCGCAGGCAAGAATCATTAAAAGGAATTCCGACAAAACCTGGCTTTGACAGGGATGAATGGCCA
ATGGCGGTTTGTCTTGAGGGAGGAAAAGGCGCAAGCGTTCAATATGTCAGTCCATCTGATAATAGGGGGGCAGGCTCATG
GGTCGGGCATCAAATCAGCGGGTTTCCTGATGGGAAAAGAATATTATTCATTGTGAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(29-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

57.983

94.444

0.548

Multiple sequence alignment