Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   NSU11_RS07910 Genome accession   NZ_CP151981
Coordinates   1584497..1585399 (+) Length   300 a.a.
NCBI ID   WP_024424185.1    Uniprot ID   -
Organism   Bacillus sp. FSL R5-0712     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1579497..1590399
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSU11_RS07890 (NSU11_07890) - 1580163..1581899 (+) 1737 WP_024424186.1 hypothetical protein -
  NSU11_RS07895 (NSU11_07895) - 1581896..1582171 (+) 276 WP_003211418.1 FlhB-like flagellar biosynthesis protein -
  NSU11_RS07900 (NSU11_07900) sucC 1582348..1583508 (+) 1161 WP_024426972.1 ADP-forming succinate--CoA ligase subunit beta -
  NSU11_RS07905 (NSU11_07905) sucD 1583531..1584433 (+) 903 WP_007499624.1 succinate--CoA ligase subunit alpha -
  NSU11_RS07910 (NSU11_07910) dprA 1584497..1585399 (+) 903 WP_024424185.1 DNA-processing protein DprA Machinery gene
  NSU11_RS07915 (NSU11_07915) topA 1585593..1587668 (+) 2076 WP_024424184.1 type I DNA topoisomerase -
  NSU11_RS07920 (NSU11_07920) trmFO 1587739..1589043 (+) 1305 WP_024424183.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  NSU11_RS07925 (NSU11_07925) xerC 1589106..1590023 (+) 918 WP_024424182.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 34096.51 Da        Isoelectric Point: 8.8768

>NTDB_id=983244 NSU11_RS07910 WP_024424185.1 1584497..1585399(+) (dprA) [Bacillus sp. FSL R5-0712]
MYNVSERMIFHRLKGLISPSLLTKWWKVDPELYINEETHHFKQDRALQTIDFTRLKQAEENEFPIFQHIVQAYLKQNIHM
IPITSPLYPSTLKNIYDPPPVLFLKGNVLYLNEEKSLGVVGTRVPSSYGEACVKKIVGELVKEEWMIVSGLAKGIDGLAH
KECIRKKGKTIGIIAGGFQHVYPKEHAQMAQYMGEHHLLLSEHPPYVKPEKWHFPMRNRLISALTKGTIVIQCKEKSGSL
ITAYQALEQGKEVFAVAGSIFDSNSTGPARLIQQGAKLVHSTKDILEEFSFHSVQYTELS

Nucleotide


Download         Length: 903 bp        

>NTDB_id=983244 NSU11_RS07910 WP_024424185.1 1584497..1585399(+) (dprA) [Bacillus sp. FSL R5-0712]
ATGTACAACGTGTCCGAAAGAATGATTTTTCACCGCTTAAAAGGCCTCATCTCACCCTCATTATTAACAAAATGGTGGAA
AGTCGATCCTGAACTATATATAAATGAAGAAACACATCATTTTAAACAGGATCGAGCATTACAAACGATCGACTTTACCC
GCTTAAAACAAGCTGAAGAAAATGAATTCCCCATTTTTCAACACATCGTTCAAGCCTATTTAAAGCAAAACATTCACATG
ATTCCCATCACATCACCCTTATATCCCAGCACACTAAAAAATATTTATGATCCTCCCCCTGTGTTATTCCTAAAAGGAAA
CGTATTATATTTAAATGAAGAAAAAAGTTTAGGTGTAGTCGGCACGCGAGTTCCATCGTCTTATGGAGAAGCATGTGTGA
AGAAAATTGTTGGTGAGCTTGTCAAGGAAGAGTGGATGATTGTCAGTGGTTTAGCTAAAGGAATCGATGGACTGGCACAT
AAAGAGTGCATCAGGAAAAAAGGGAAAACAATCGGCATTATAGCAGGCGGCTTTCAGCATGTATACCCAAAAGAACATGC
ACAAATGGCTCAATACATGGGCGAACATCATTTGCTTTTGTCAGAGCACCCGCCTTATGTCAAACCAGAAAAGTGGCATT
TTCCAATGAGAAATCGTTTAATTAGTGCATTGACGAAAGGGACCATCGTGATTCAGTGCAAAGAAAAGAGCGGTTCTCTT
ATTACAGCCTATCAAGCGCTTGAGCAAGGCAAAGAAGTATTTGCGGTTGCTGGATCCATCTTTGATTCTAATTCCACAGG
TCCGGCAAGACTCATTCAGCAGGGGGCAAAGCTTGTTCATTCCACAAAGGATATTTTAGAGGAATTCTCCTTCCACAGCG
TTCAATATACTGAACTCTCATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

54.355

95.667

0.52
  dprA Legionella pneumophila strain ERS1305867

37.377

100

0.38

Multiple sequence alignment