Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   NSU11_RS07065 Genome accession   NZ_CP151981
Coordinates   1417888..1418166 (+) Length   92 a.a.
NCBI ID   WP_017359400.1    Uniprot ID   A0A9X0FXL5
Organism   Bacillus sp. FSL R5-0712     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1412888..1423166
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSU11_RS07040 (NSU11_07040) - 1412985..1413260 (-) 276 WP_039178200.1 hypothetical protein -
  NSU11_RS07045 (NSU11_07045) - 1413404..1415023 (+) 1620 WP_342493865.1 ATP-binding cassette domain-containing protein -
  NSU11_RS07050 (NSU11_07050) - 1415058..1416290 (-) 1233 WP_058837765.1 aminopeptidase -
  NSU11_RS07055 (NSU11_07055) - 1416398..1416529 (-) 132 WP_003210922.1 protein YkpC -
  NSU11_RS07060 (NSU11_07060) mreBH 1416604..1417611 (-) 1008 WP_024424745.1 rod-share determining protein MreBH -
  NSU11_RS07065 (NSU11_07065) abrB 1417888..1418166 (+) 279 WP_017359400.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  NSU11_RS07070 (NSU11_07070) - 1418311..1419621 (+) 1311 WP_058837764.1 ATP-binding protein -
  NSU11_RS07075 (NSU11_07075) - 1419626..1420462 (+) 837 WP_342493866.1 gamma-glutamylcyclotransferase -
  NSU11_RS07080 (NSU11_07080) - 1420500..1421168 (+) 669 WP_008345123.1 TrkA family potassium uptake protein -
  NSU11_RS07085 (NSU11_07085) ade 1421430..1423157 (+) 1728 WP_025092364.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10305.97 Da        Isoelectric Point: 4.5332

>NTDB_id=983243 NSU11_RS07065 WP_017359400.1 1417888..1418166(+) (abrB) [Bacillus sp. FSL R5-0712]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSMEFFIDGDKIVLKKYQPEGVCLMTGEITSENHEYGNGQITLSAEGAE
LLLKELQEALQQ

Nucleotide


Download         Length: 279 bp        

>NTDB_id=983243 NSU11_RS07065 WP_017359400.1 1417888..1418166(+) (abrB) [Bacillus sp. FSL R5-0712]
TTGAAATCTATCGGAGTCGTAAGAAAAGTAGACGAACTAGGGCGTATTGTCATGCCAATCGAATTGAGAAGAGCACTTGA
TATCGCTATTAAAGACAGTATGGAATTTTTTATAGATGGAGATAAAATCGTCTTGAAAAAATATCAGCCAGAGGGTGTTT
GTCTCATGACTGGTGAGATTACATCAGAGAACCATGAATACGGAAATGGTCAAATTACATTAAGCGCTGAAGGCGCAGAA
CTGCTGTTAAAAGAGCTGCAAGAAGCTCTTCAGCAGTAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.348

100

0.543

Multiple sequence alignment