Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   V3C22_RS00205 Genome accession   NZ_CP183775
Coordinates   28552..29307 (+) Length   251 a.a.
NCBI ID   WP_019316666.1    Uniprot ID   -
Organism   Streptococcus mutans strain Xc     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 23552..34307
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V3C22_RS00185 (V3C22_00185) mreD 24288..24794 (+) 507 WP_002263141.1 rod shape-determining protein MreD -
  V3C22_RS00190 (V3C22_00190) gbpB 24904..26205 (+) 1302 WP_002284528.1 glucan-binding protein GbpB -
  V3C22_RS00195 (V3C22_00195) - 26330..27298 (+) 969 WP_002263139.1 ribose-phosphate diphosphokinase -
  V3C22_RS00200 (V3C22_00200) - 27387..28562 (+) 1176 WP_226707007.1 pyridoxal phosphate-dependent aminotransferase -
  V3C22_RS00205 (V3C22_00205) recO 28552..29307 (+) 756 WP_019316666.1 DNA repair protein RecO Machinery gene
  V3C22_RS00210 (V3C22_00210) plsX 29515..30513 (+) 999 WP_002267904.1 phosphate acyltransferase PlsX -
  V3C22_RS00215 (V3C22_00215) - 30515..30763 (+) 249 WP_002263135.1 acyl carrier protein -
  V3C22_RS00220 (V3C22_00220) comA 30991..31572 (+) 582 WP_002273395.1 ATP-binding cassette domain-containing protein Regulator
  V3C22_RS00225 (V3C22_00225) purC 31694..32401 (+) 708 WP_002267902.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 251 a.a.        Molecular weight: 29354.86 Da        Isoelectric Point: 6.4972

>NTDB_id=983214 V3C22_RS00205 WP_019316666.1 28552..29307(+) (recO) [Streptococcus mutans strain Xc]
MQTKETRGLVLYNRPFREDDKLVKIFTETSGKHMFFVRHATNSKLSSVIQPLILADFILKINNHGLSYIEDYKGVSLFKE
INADIYKLAYATYLVSLADAAISDAVYDAPLFAFLIKTLELMDEGLDYEILTNIFEIQILDRFGVQLNFHDCVFCHRVGL
AFDFSHRYSGLLCPEHYEKDLYRSHLDPNVPYLLNQFQTLHFDSLKTISVKPDMKQKLRKFIDEVYEDYIGLRLKSKKFI
DDLDHWGQVMK

Nucleotide


Download         Length: 756 bp        

>NTDB_id=983214 V3C22_RS00205 WP_019316666.1 28552..29307(+) (recO) [Streptococcus mutans strain Xc]
ATGCAGACTAAAGAAACAAGAGGTTTAGTGCTTTATAATCGGCCATTTAGAGAGGATGATAAGCTGGTTAAAATTTTTAC
GGAAACTTCCGGCAAACACATGTTTTTTGTGCGTCATGCTACTAATTCAAAATTGTCTTCTGTCATTCAACCATTGATTC
TAGCTGATTTTATTTTAAAAATTAATAATCATGGACTTTCTTATATTGAAGATTATAAGGGAGTCTCTCTTTTTAAGGAA
ATTAATGCAGATATTTATAAATTAGCTTATGCTACTTACCTTGTGTCTTTGGCTGATGCTGCTATTTCAGATGCTGTCTA
TGATGCCCCTCTTTTTGCTTTTTTAATTAAGACCCTAGAATTGATGGATGAAGGTCTCGATTATGAAATTTTGACCAATA
TTTTTGAAATTCAAATTCTAGATCGCTTTGGCGTTCAACTTAATTTTCATGACTGTGTTTTTTGCCATCGTGTCGGTTTA
GCTTTTGATTTTTCACATCGCTATTCAGGTCTTTTGTGTCCTGAACATTATGAAAAAGATCTTTATCGTAGTCACTTAGA
TCCTAATGTCCCTTACCTTTTGAACCAATTTCAAACTTTACATTTTGATAGCTTAAAGACCATTTCAGTTAAACCTGACA
TGAAACAAAAGCTGAGAAAATTTATTGATGAAGTTTATGAGGACTATATTGGTCTTCGTCTCAAAAGTAAAAAATTTATT
GATGATTTAGATCATTGGGGACAAGTTATGAAATAA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(84-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

65.339

100

0.653