Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   ACN3VN_RS09015 Genome accession   NZ_CP183396
Coordinates   1949766..1950428 (-) Length   220 a.a.
NCBI ID   WP_046418980.1    Uniprot ID   -
Organism   Xylella fastidiosa strain CFBP8074     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1944766..1955428
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN3VN_RS08995 (ACN3VN_08995) - 1945239..1945880 (-) 642 WP_010893601.1 ParA family protein -
  ACN3VN_RS09000 (ACN3VN_09000) lpxK 1946542..1947561 (-) 1020 WP_058569241.1 tetraacyldisaccharide 4'-kinase -
  ACN3VN_RS09005 (ACN3VN_09005) msbA 1947558..1949306 (-) 1749 WP_058569242.1 lipid A export permease/ATP-binding protein MsbA -
  ACN3VN_RS09010 (ACN3VN_09010) - 1949324..1949761 (-) 438 WP_004089267.1 ExbD/TolR family protein -
  ACN3VN_RS09015 (ACN3VN_09015) exbB 1949766..1950428 (-) 663 WP_046418980.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ACN3VN_RS09020 (ACN3VN_09020) comA 1950413..1952890 (-) 2478 WP_031337969.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACN3VN_RS09025 (ACN3VN_09025) lolD 1953239..1953961 (-) 723 WP_023907913.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  ACN3VN_RS09030 (ACN3VN_09030) - 1953954..1955195 (-) 1242 WP_023907914.1 lipoprotein-releasing ABC transporter permease subunit -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 24028.46 Da        Isoelectric Point: 8.9727

>NTDB_id=983196 ACN3VN_RS09015 WP_046418980.1 1949766..1950428(-) (exbB) [Xylella fastidiosa strain CFBP8074]
MLELVKAGGWPMLPLLMLGVVALAIVLERLWTLRRNEVLPSGLGREVREWVRRGKLDQNHLESLRRNSPLGALLAAALDV
KGGVREMIRERIEDTGRHLVHRMERFLNALGTIASAGPLLGLLGTVVGMIQMFLGILDYGVGDVNQLAGGIGKALVCTAT
GMIIAIPALIFHRYFKGRITGYVIEMEQEAMLLLDAIDGLQIAIQGRNAEVVHPNAVTKD

Nucleotide


Download         Length: 663 bp        

>NTDB_id=983196 ACN3VN_RS09015 WP_046418980.1 1949766..1950428(-) (exbB) [Xylella fastidiosa strain CFBP8074]
ATGCTGGAACTGGTAAAGGCTGGCGGCTGGCCGATGTTGCCGCTGTTGATGTTAGGTGTTGTTGCATTGGCGATTGTGCT
TGAAAGGCTGTGGACTCTGCGTCGTAATGAGGTGTTGCCGTCGGGGCTGGGTCGGGAGGTTCGTGAGTGGGTGAGGCGTG
GCAAATTGGACCAAAATCATCTTGAGTCTCTGCGCCGTAATTCTCCGCTTGGTGCGCTATTGGCCGCCGCTTTGGATGTA
AAAGGTGGCGTACGTGAAATGATTCGTGAACGTATTGAGGATACAGGACGCCATCTGGTGCATCGCATGGAGCGTTTTCT
GAATGCACTCGGTACGATTGCTTCTGCAGGTCCTTTACTTGGTTTGCTAGGTACTGTGGTCGGTATGATTCAAATGTTCC
TGGGCATTCTCGATTATGGCGTGGGCGATGTGAATCAGCTTGCTGGAGGGATTGGCAAGGCATTGGTTTGCACTGCTACA
GGTATGATTATTGCGATCCCCGCTCTGATTTTTCATCGTTATTTCAAGGGGCGAATTACTGGCTACGTGATTGAGATGGA
GCAAGAGGCAATGCTCCTGCTGGATGCGATTGATGGTCTTCAGATTGCTATTCAAGGAAGAAATGCCGAAGTGGTGCACC
CCAATGCTGTCACCAAGGATTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

48.744

90.455

0.441

Multiple sequence alignment