Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   ACN3VN_RS07635 Genome accession   NZ_CP183396
Coordinates   1622762..1624144 (+) Length   460 a.a.
NCBI ID   WP_199275912.1    Uniprot ID   -
Organism   Xylella fastidiosa strain CFBP8074     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1617762..1629144
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN3VN_RS07605 (ACN3VN_07605) - 1619062..1619289 (-) 228 WP_004089208.1 BolA family protein -
  ACN3VN_RS07610 (ACN3VN_07610) - 1619351..1620352 (+) 1002 WP_046419460.1 KpsF/GutQ family sugar-phosphate isomerase -
  ACN3VN_RS07615 (ACN3VN_07615) - 1620370..1620918 (+) 549 WP_004089213.1 KdsC family phosphatase -
  ACN3VN_RS07620 (ACN3VN_07620) lptC 1620915..1621484 (+) 570 WP_010893913.1 LPS export ABC transporter periplasmic protein LptC -
  ACN3VN_RS07625 (ACN3VN_07625) lptA 1621462..1621992 (+) 531 WP_023906743.1 lipopolysaccharide transport periplasmic protein LptA -
  ACN3VN_RS07630 (ACN3VN_07630) lptB 1621992..1622714 (+) 723 WP_023906744.1 LPS export ABC transporter ATP-binding protein -
  ACN3VN_RS07635 (ACN3VN_07635) rpoN/rpoN1 1622762..1624144 (+) 1383 WP_199275912.1 RNA polymerase factor sigma-54 Machinery gene
  ACN3VN_RS07640 (ACN3VN_07640) hpf 1624235..1624552 (+) 318 WP_004083778.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  ACN3VN_RS07645 (ACN3VN_07645) hprK 1624818..1625768 (+) 951 WP_004083779.1 HPr(Ser) kinase/phosphatase -
  ACN3VN_RS07650 (ACN3VN_07650) rapZ 1625765..1626637 (+) 873 WP_046419455.1 RNase adapter RapZ -
  ACN3VN_RS07655 (ACN3VN_07655) - 1627008..1627400 (+) 393 WP_010893907.1 PTS sugar transporter subunit IIA -
  ACN3VN_RS07660 (ACN3VN_07660) - 1627393..1627662 (+) 270 WP_004089222.1 HPr family phosphocarrier protein -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 51223.31 Da        Isoelectric Point: 6.5117

>NTDB_id=983186 ACN3VN_RS07635 WP_199275912.1 1622762..1624144(+) (rpoN/rpoN1) [Xylella fastidiosa strain CFBP8074]
MKARLRTSIGQQLVMTPQLHQSIRLLQMSNAELQLEITAAIESNPLLDWAENQSSETSEATEREVETEDWQAKESAWDIN
GSKSNENDDNNPAERLTTGNTLTDHLLWQLHLSPLSARDYQIGTVLIDAIEEDGYLRELLSTLTATLAPLSVDESELLPV
LRHIQSFDPTGVAARSLAECLTLQLKSLREAIPGRTLALQIVNSPLLEQLPRSGVTGLARELKRPSQDVQQAVELIRGLD
PRPGKKIGDLEVGTYVVPDCVIWRQHGLWQAALLERAFPQVVLHRGYEQLINRCNDANASYLRNQLQEARWLLKGLEARG
ETLLKVVNSLIRHQAGFLEFGQHALRPLTIRELATELALHESTVSRAIAGKYVRTPRGTLPLRTFFASGISTDSGGETSN
SAIQAIIRRLIETENPRKPLSDAKLAELLKTSGIPVARRTIAKYRDAMNISASHERVRVL

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=983186 ACN3VN_RS07635 WP_199275912.1 1622762..1624144(+) (rpoN/rpoN1) [Xylella fastidiosa strain CFBP8074]
TTGAAAGCAAGACTGCGAACATCCATCGGACAACAGCTGGTCATGACACCCCAGCTACACCAAAGCATCCGTCTGCTGCA
AATGTCCAACGCCGAATTGCAACTGGAAATCACCGCCGCGATAGAGAGCAATCCACTCTTGGACTGGGCCGAGAACCAAT
CATCGGAGACCAGCGAAGCTACCGAAAGGGAAGTAGAAACAGAAGATTGGCAGGCCAAGGAATCCGCCTGGGATATCAAC
GGCAGTAAAAGCAACGAGAATGACGACAACAACCCTGCTGAACGTCTGACCACCGGGAACACTCTCACTGATCACTTGCT
GTGGCAACTGCACCTCTCCCCACTGTCAGCACGTGATTACCAAATAGGCACCGTCTTGATTGATGCCATAGAAGAAGATG
GTTACCTGCGTGAACTTTTGTCCACACTGACTGCAACCCTGGCCCCGTTATCCGTAGATGAAAGCGAACTGCTACCAGTA
TTACGACACATTCAATCTTTTGACCCGACCGGCGTGGCTGCACGCTCGCTGGCCGAGTGCTTGACACTGCAACTGAAATC
ATTGAGAGAAGCGATACCCGGACGCACACTTGCACTGCAGATTGTCAACAGCCCACTGCTCGAACAATTGCCGCGCAGTG
GTGTCACCGGACTGGCACGCGAACTGAAACGACCCTCCCAAGACGTCCAACAGGCAGTGGAATTGATCCGTGGACTGGAC
CCTCGCCCAGGTAAGAAAATTGGCGACTTAGAAGTTGGAACCTACGTTGTACCGGACTGTGTGATCTGGCGCCAACATGG
GCTGTGGCAAGCCGCGCTGTTGGAACGTGCATTCCCACAGGTCGTCCTCCACCGCGGCTACGAACAGCTCATCAACCGCT
GCAATGACGCCAATGCGAGCTACCTACGCAACCAACTCCAGGAAGCACGGTGGCTGCTCAAGGGCCTGGAAGCACGCGGT
GAAACCTTGTTAAAAGTGGTAAACAGCCTCATACGTCACCAAGCGGGATTCTTGGAATTCGGCCAACACGCGTTACGTCC
ATTGACTATCCGCGAATTAGCAACCGAACTTGCCCTGCATGAATCCACCGTATCCCGTGCAATTGCTGGCAAGTATGTAC
GCACCCCACGTGGCACCTTACCGCTACGCACCTTTTTCGCTTCAGGAATCAGCACCGACAGCGGCGGAGAGACCTCCAAC
TCTGCCATTCAAGCAATCATCAGACGTCTCATAGAAACTGAAAACCCCCGCAAGCCACTCTCTGACGCAAAACTAGCTGA
ATTGCTGAAGACATCCGGTATCCCAGTAGCGCGACGCACCATAGCAAAGTATCGTGATGCTATGAACATCTCCGCATCCC
ACGAACGCGTCCGAGTCCTCTGA

Domains

Predicted by InterProScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(300-458)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(94-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

38

100

0.413

Multiple sequence alignment