Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   NSS96_RS06655 Genome accession   NZ_CP151980
Coordinates   1305725..1306186 (-) Length   153 a.a.
NCBI ID   WP_008356877.1    Uniprot ID   -
Organism   Bacillus sp. FSL W7-1336     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1300725..1311186
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSS96_RS06630 (NSS96_06630) - 1301330..1302214 (+) 885 WP_144496613.1 cation diffusion facilitator family transporter -
  NSS96_RS06635 (NSS96_06635) - 1302279..1302431 (-) 153 WP_162842519.1 hypothetical protein -
  NSS96_RS06640 (NSS96_06640) - 1302733..1303272 (+) 540 WP_024424707.1 RDD family protein -
  NSS96_RS06645 (NSS96_06645) - 1303397..1304707 (+) 1311 WP_144496614.1 MFS transporter -
  NSS96_RS06650 (NSS96_06650) - 1304781..1305689 (+) 909 WP_024424709.1 chemotaxis protein -
  NSS96_RS06655 (NSS96_06655) kre 1305725..1306186 (-) 462 WP_008356877.1 YkyB family protein Regulator
  NSS96_RS06660 (NSS96_06660) - 1306685..1306861 (+) 177 WP_186365583.1 hypothetical protein -
  NSS96_RS06665 (NSS96_06665) - 1306988..1307905 (-) 918 WP_111927305.1 AraC family transcriptional regulator -
  NSS96_RS06670 (NSS96_06670) - 1308019..1308930 (+) 912 WP_144496615.1 EamA family transporter -
  NSS96_RS06675 (NSS96_06675) - 1309067..1309282 (-) 216 WP_024424712.1 hypothetical protein -
  NSS96_RS06680 (NSS96_06680) - 1309542..1310819 (-) 1278 WP_034281582.1 MFS transporter -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 17711.30 Da        Isoelectric Point: 10.2452

>NTDB_id=983180 NSS96_RS06655 WP_008356877.1 1305725..1306186(-) (kre) [Bacillus sp. FSL W7-1336]
MDDYAHTKDIEPTAENIAKAIYTVNRHAKTAPNPKFLYLLKKRALQKLLQEGKGRKVGLHFSNNPKYSQQQSDVLIEIGD
YYFHLPPTKEDFEFLPHLGNLNQSYRNPKANMSLNRAKQILQTYVGLKEKPAATKQKSHYTKPVFKRLGESYF

Nucleotide


Download         Length: 462 bp        

>NTDB_id=983180 NSS96_RS06655 WP_008356877.1 1305725..1306186(-) (kre) [Bacillus sp. FSL W7-1336]
ATGGACGATTATGCTCATACTAAAGACATAGAACCTACAGCAGAAAACATCGCAAAAGCCATTTATACTGTTAACCGCCA
TGCTAAAACCGCACCAAACCCCAAGTTTCTTTATCTTTTGAAAAAACGCGCGCTGCAAAAACTATTGCAAGAAGGTAAAG
GAAGAAAAGTGGGCCTACATTTCTCTAACAATCCCAAGTATAGTCAACAACAGTCCGACGTGCTGATTGAAATTGGAGAT
TATTATTTTCACCTGCCACCAACGAAAGAAGACTTCGAATTTTTGCCACACTTAGGAAATTTAAATCAATCATATCGCAA
TCCGAAAGCGAATATGTCATTAAACCGAGCAAAGCAAATACTTCAAACGTATGTCGGTTTAAAAGAAAAACCTGCCGCCA
CAAAACAAAAATCACATTACACAAAGCCCGTCTTCAAACGACTCGGGGAAAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

75.974

100

0.765

Multiple sequence alignment