Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   ACN3VN_RS02165 Genome accession   NZ_CP183396
Coordinates   493947..494333 (-) Length   128 a.a.
NCBI ID   WP_031336286.1    Uniprot ID   -
Organism   Xylella fastidiosa strain CFBP8074     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 488947..499333
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN3VN_RS02140 (ACN3VN_02140) - 489225..489602 (+) 378 WP_046418016.1 DUF4124 domain-containing protein -
  ACN3VN_RS02145 (ACN3VN_02145) - 489687..491381 (+) 1695 WP_058569605.1 proline--tRNA ligase -
  ACN3VN_RS02150 (ACN3VN_02150) - 491531..491899 (+) 369 Protein_409 H-NS family nucleoid-associated regulatory protein -
  ACN3VN_RS02155 (ACN3VN_02155) - 492244..492444 (-) 201 WP_010892976.1 hypothetical protein -
  ACN3VN_RS02160 (ACN3VN_02160) - 493013..493363 (+) 351 WP_004083585.1 DMT family protein -
  ACN3VN_RS02165 (ACN3VN_02165) pilH 493947..494333 (-) 387 WP_031336286.1 twitching motility response regulator PilH Machinery gene
  ACN3VN_RS02170 (ACN3VN_02170) - 494426..495430 (-) 1005 WP_046418019.1 oxidoreductase -
  ACN3VN_RS02175 (ACN3VN_02175) hflK 495577..496716 (+) 1140 WP_058569606.1 FtsH protease activity modulator HflK -
  ACN3VN_RS02180 (ACN3VN_02180) hflC 496713..497576 (+) 864 WP_010892981.1 protease modulator HflC -
  ACN3VN_RS02185 (ACN3VN_02185) - 497655..497921 (+) 267 WP_010892982.1 DUF2065 domain-containing protein -

Sequence

Protein


Download         Length: 128 a.a.        Molecular weight: 14261.45 Da        Isoelectric Point: 6.7299

>NTDB_id=983167 ACN3VN_RS02165 WP_031336286.1 493947..494333(-) (pilH) [Xylella fastidiosa strain CFBP8074]
MARVLIVEDSPSQLLSIQRIVEKLGHETITATDGNTGVEAAKAHLPDLVLMDVVMPKINGFQATRTLKREPATQHVPVIL
VTTKDQDTDRLWGIRQGARAYITKPFSESELLEVMERIFSQPKAKANE

Nucleotide


Download         Length: 387 bp        

>NTDB_id=983167 ACN3VN_RS02165 WP_031336286.1 493947..494333(-) (pilH) [Xylella fastidiosa strain CFBP8074]
ATGGCACGCGTTTTGATCGTCGAGGACTCACCGTCACAATTACTCAGTATCCAGAGAATAGTCGAAAAACTAGGGCACGA
AACCATTACCGCAACCGATGGCAACACCGGGGTGGAGGCAGCCAAAGCACATTTACCTGATCTGGTACTGATGGACGTGG
TCATGCCTAAAATTAATGGGTTTCAAGCCACACGCACACTCAAGCGCGAGCCAGCAACGCAACATGTACCAGTCATCCTG
GTAACCACCAAGGACCAAGACACTGATCGGCTATGGGGCATACGCCAGGGCGCGCGCGCCTACATCACCAAGCCTTTCTC
AGAGAGTGAATTGCTAGAAGTCATGGAAAGAATATTCAGCCAACCAAAAGCAAAAGCGAACGAGTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

42.857

92.969

0.398