Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   ACN3VN_RS00470 Genome accession   NZ_CP183396
Coordinates   116662..117297 (+) Length   211 a.a.
NCBI ID   WP_046417694.1    Uniprot ID   -
Organism   Xylella fastidiosa strain CFBP8074     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 111662..122297
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN3VN_RS00460 (ACN3VN_00460) - 113108..114136 (-) 1029 WP_058569568.1 right-handed parallel beta-helix repeat-containing protein -
  ACN3VN_RS00465 (ACN3VN_00465) - 115158..116189 (+) 1032 WP_046417691.1 NAD(P)H-dependent flavin oxidoreductase -
  ACN3VN_RS00470 (ACN3VN_00470) dinR/lexA 116662..117297 (+) 636 WP_046417694.1 transcriptional repressor LexA Regulator
  ACN3VN_RS00475 (ACN3VN_00475) recA 117479..118522 (+) 1044 WP_046417698.1 recombinase RecA Machinery gene
  ACN3VN_RS00480 (ACN3VN_00480) alaS 119009..121663 (+) 2655 WP_058569570.1 alanine--tRNA ligase -
  ACN3VN_RS00485 (ACN3VN_00485) csrA 121802..122017 (+) 216 WP_004085529.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23381.72 Da        Isoelectric Point: 5.6140

>NTDB_id=983159 ACN3VN_RS00470 WP_046417694.1 116662..117297(+) (dinR/lexA) [Xylella fastidiosa strain CFBP8074]
MSLSDIQQAILSLITNHINADGVSPSQTEIARAFGFKGVRAVQHHLDVLEQQGMIRRVPGQARGIRLKHLTEVDEAALAL
QSEDVLRLPVLGRVAAGQPIGADIGEDRVVLLDRVFFSPAPDYLLRVQGDSMRDEGIFDDDLIGVHRTQDAHSGQIVVAR
IDDEITVKLLKISKDRIRLLPRNPDFAPIEVRSDQDFAIEGLYCGLLRPNR

Nucleotide


Download         Length: 636 bp        

>NTDB_id=983159 ACN3VN_RS00470 WP_046417694.1 116662..117297(+) (dinR/lexA) [Xylella fastidiosa strain CFBP8074]
ATGAGTTTGAGCGATATTCAGCAGGCAATCCTGTCATTGATTACCAACCACATCAACGCTGATGGCGTTTCTCCTTCGCA
GACGGAGATCGCGCGTGCATTCGGCTTCAAAGGGGTTCGCGCGGTGCAGCATCACCTTGATGTGTTGGAGCAACAGGGGA
TGATTCGCCGCGTCCCTGGACAGGCGCGTGGCATCCGGTTGAAGCATCTTACTGAGGTGGATGAGGCTGCGTTAGCTTTG
CAGAGTGAGGATGTGTTGCGCTTGCCAGTGCTGGGCCGTGTTGCGGCTGGTCAGCCGATCGGTGCTGATATCGGTGAGGA
TCGCGTGGTGTTGTTGGATCGGGTGTTCTTCTCCCCAGCACCGGATTATCTGTTGAGGGTGCAAGGTGATTCGATGCGCG
ATGAAGGAATTTTCGATGATGATTTGATCGGCGTACATCGTACGCAGGATGCGCATTCTGGACAAATTGTGGTGGCGCGC
ATTGATGATGAGATTACCGTCAAACTGTTGAAGATCAGTAAAGACCGGATTCGTTTGCTACCGCGTAATCCTGACTTTGC
ACCGATTGAGGTGAGGTCAGATCAGGATTTCGCCATTGAGGGATTGTATTGCGGCTTGCTGCGCCCCAACCGGTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(2-64)

Peptidase S24-like (Peptidase_S24)

(89-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

37.799

99.052

0.374

Multiple sequence alignment