Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   ACN20J_RS48790 Genome accession   NZ_CP183383
Coordinates   11194419..11195435 (-) Length   338 a.a.
NCBI ID   WP_189844967.1    Uniprot ID   -
Organism   Streptomyces sp. 2-1     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 11189419..11200435
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN20J_RS48775 (ACN20J_48765) - 11189555..11190565 (-) 1011 WP_419668670.1 ABC transporter substrate-binding protein -
  ACN20J_RS48780 (ACN20J_48770) - 11190605..11192470 (-) 1866 WP_419668671.1 SIP domain-containing protein -
  ACN20J_RS48785 (ACN20J_48775) - 11192599..11194206 (+) 1608 WP_419668672.1 helix-turn-helix domain-containing protein -
  ACN20J_RS48790 (ACN20J_48780) cytR 11194419..11195435 (-) 1017 WP_189844967.1 LacI family DNA-binding transcriptional regulator Regulator
  ACN20J_RS48795 (ACN20J_48785) - 11195721..11197034 (+) 1314 WP_419668673.1 extracellular solute-binding protein -
  ACN20J_RS48800 (ACN20J_48790) - 11197145..11198140 (+) 996 WP_189844969.1 carbohydrate ABC transporter permease -
  ACN20J_RS48805 (ACN20J_48795) - 11198154..11199095 (+) 942 WP_190231796.1 carbohydrate ABC transporter permease -

Sequence

Protein


Download         Length: 338 a.a.        Molecular weight: 36023.79 Da        Isoelectric Point: 6.0555

>NTDB_id=983155 ACN20J_RS48790 WP_189844967.1 11194419..11195435(-) (cytR) [Streptomyces sp. 2-1]
MGGSQRPTIKTVAARAGVGRTTVSRVINGSELVSDKAKAAVLAAIAELNYVPNSVARGLVTSRTNSVALVIPESESRLGS
EPYFSAVIRGVSTALAKTRTQLQLVLVRDQAERDQLTESVAERRVDGVLLVSVHEHDPLPGLLEDMGLPTVLAGRRSPAE
SLSHVHSDNAGGAAAAVRHLLARGRRTITTISGPLDMDVARSRLQGWREALEKAGHEATEHLVVSADFTEEGGEAAMRSL
LEQLPTLDAVFVASDVMAAGALAELRRQGRSVPGDVSVVGFDDSIIARHSNPPLTSVRQPIEEIGNTIARILLEEISNPE
EPRQHVVLPTELVVRESS

Nucleotide


Download         Length: 1017 bp        

>NTDB_id=983155 ACN20J_RS48790 WP_189844967.1 11194419..11195435(-) (cytR) [Streptomyces sp. 2-1]
ATGGGGGGCAGCCAACGCCCGACCATCAAGACCGTGGCCGCGCGCGCCGGGGTCGGACGTACCACGGTTTCACGAGTCAT
CAACGGCTCGGAACTCGTCAGCGACAAGGCCAAGGCCGCCGTGCTCGCCGCCATCGCCGAACTCAACTACGTTCCGAACT
CGGTTGCCCGGGGACTCGTGACGAGCCGGACGAACTCCGTGGCCCTGGTGATTCCCGAGTCGGAGAGCAGACTGGGCTCC
GAGCCCTATTTCTCGGCGGTCATCCGCGGGGTCAGCACCGCGCTCGCCAAGACCCGGACACAGCTCCAACTGGTCCTCGT
ACGCGACCAGGCCGAGCGGGACCAGCTCACCGAGTCGGTGGCGGAGCGGCGGGTCGACGGAGTACTCCTGGTCTCGGTGC
ACGAGCACGACCCGCTGCCCGGTCTGCTGGAAGACATGGGTCTGCCCACGGTGCTCGCCGGGCGCCGCTCCCCCGCCGAG
TCACTCAGCCATGTGCACTCCGACAACGCGGGCGGAGCCGCTGCGGCCGTCAGACACCTCCTCGCTCGCGGGCGGCGGAC
CATCACGACGATCAGCGGCCCCCTCGACATGGACGTGGCGCGCAGCCGGCTCCAGGGGTGGCGCGAGGCCCTTGAGAAAG
CGGGCCACGAAGCCACGGAGCACCTCGTGGTCTCGGCCGACTTCACCGAGGAGGGCGGCGAGGCCGCGATGCGTTCACTC
CTTGAACAACTCCCCACGCTCGACGCCGTGTTCGTCGCCTCGGACGTCATGGCGGCAGGTGCGCTGGCGGAGCTGCGCAG
GCAGGGGCGCAGTGTCCCTGGCGATGTGTCGGTGGTCGGATTCGACGACTCCATCATCGCCCGGCACAGCAACCCGCCCC
TCACCAGCGTGCGTCAGCCCATCGAGGAGATCGGCAACACGATCGCCCGCATCCTCCTGGAAGAGATCAGCAATCCAGAA
GAGCCGCGTCAGCACGTCGTTCTTCCCACCGAACTCGTGGTGCGCGAATCGTCGTGA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(177-338)

Bacterial regulatory proteins, lacI family (LacI)

(8-53)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

35.569

100

0.361
  cytR Vibrio parahaemolyticus RIMD 2210633

35.569

100

0.361